LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RP11-234K24.3
hsa-miR-519b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441208
Biotype: antisense
Gene id: ENSG00000232406
Gene Name: RP11-234K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1962-1973
0.007
7
7mer
1780-1795
0.007
3
6mer
41-67
0.005
1
6mer
320-336
0.005
4
6mer
2604-2629
0.004
1
6mer
1305-1330
0.003
2
LINC00554
hsa-miR-519b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000564841
Biotype: antisense
Gene id: ENSG00000260738
Gene Name: LINC00554
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1949-1958
0.019
9
6mer
2023-2050
0.011
10
CTD-2515H24.2
hsa-miR-519b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-236
0.030
2
HAND2-AS1
hsa-miR-519b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2113-2134
0.011
7
7mer
2394-2413
0.010
Not Conserved
6mer
2197-2213
0.006
4
6mer
239-259
0.003
1
CTD-2313F11.1
hsa-miR-519b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615566
Biotype: retained_intron
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
704-718
0.017
2
7mer
521-543
0.013
1
XLOC_004823
hsa-miR-519b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
763-777
0.018
2
7mer
580-602
0.012
1
RP11-300A12.2
hsa-miR-519b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567616
Biotype: lincRNA
Gene id: ENSG00000259814
Gene Name: RP11-300A12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-107
0.030
0
RP11-159H22.2
hsa-miR-519b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529258
Biotype: antisense
Gene id: ENSG00000254862
Gene Name: RP11-159H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-34
0.030
4
HAND2-AS1
hsa-miR-519b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
427-448
0.009
7
7mer
708-727
0.008
Not Conserved
7mer
2350-2371
0.006
8
6mer
511-527
0.004
4
6mer
336-356
0.003
1
XLOC_012017
hsa-miR-519b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024736
Biotype: transcript isomorph
Gene id: XLOC_012017
Gene Name: XLOC_012017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
784-808
0.016
7
8mer
1667-1679
0.008
1
6mer
1960-1983
0.003
1
6mer
1357-1370
0.002
0
6mer
1341-1368
0.001
1
XLOC_000173
hsa-miR-519b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000192
Biotype: transcript isomorph
Gene id: XLOC_000173
Gene Name: XLOC_000173
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-47
0.030
1
RP11-508N22.12
hsa-miR-519b-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
785-798
0.007
1
6mer
5493-5509
0.005
1
7mer
5824-5844
0.005
0
6mer
5282-5306
0.005
1
7mer
4512-4530
0.004
1
6mer
1813-1831
0.004
1
6mer
5846-5871
0.002
1
RP11-545A16.1
hsa-miR-519b-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569644
Biotype: antisense
Gene id: ENSG00000261250
Gene Name: RP11-545A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-204
0.026
0
6mer
3005-3029
0.003
Not Conserved
RP11-355O1.11
hsa-miR-519b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561961
Biotype: sense_overlapping
Gene id: ENSG00000261094
Gene Name: RP11-355O1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1846-1861
0.014
1
7mer
1261-1283
0.013
3
7mer
110-128
0.003
0
CTC-506B8.1
hsa-miR-519b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502568
Biotype: antisense
Gene id: ENSG00000249180
Gene Name: CTC-506B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
99-123
0.030
1
ALDH1L1-AS2
hsa-miR-519b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500232
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1076-1101
0.022
0
7mer
559-579
0.005
0
6mer
1879-1902
0.003
0
RP11-34P13.13
hsa-miR-519b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3814-3837
0.012
1
7mer
87-105
0.009
0
6mer
4484-4502
0.008
0
FAM182B
hsa-miR-519b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5379-5394
0.020
0
6mer
363-374
0.004
0
7mer
4701-4723
0.003
0
6mer
4463-4478
0.003
0
RP6-91H8.2
hsa-miR-519b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000561794
Biotype: lincRNA
Gene id: ENSG00000259907
Gene Name: RP6-91H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-32
0.022
0
6mer
491-514
0.007
0
RP11-305L7.6
hsa-miR-519b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421595
Biotype: lincRNA
Gene id: ENSG00000229694
Gene Name: RP11-305L7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-168
0.029
1
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