LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000649
hsa-miR-519b-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001361
Biotype: transcript isomorph
Gene id: XLOC_000649
Gene Name: XLOC_000649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
640-660
0.031
1
XLOC_012630
hsa-miR-519b-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1951-1968
0.009
0
6mer
499-513
0.009
0
6mer
814-829
0.006
0
7mer
1363-1381
0.004
0
6mer
999-1010
0.002
Not Conserved
XLOC_008152
hsa-miR-519b-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017504
Biotype: transcript isomorph
Gene id: XLOC_008152
Gene Name: XLOC_008152
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1982-1995
0.015
3
6mer
939-957
0.012
8
6mer
1526-1553
0.004
3
XLOC_004804
hsa-miR-519b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-278
0.012
1
8mer
3021-3041
0.008
1
6mer
1147-1171
0.004
1
7mer
938-956
0.003
0
6mer
3135-3151
0.002
0
7mer
1803-1822
0.002
0
LL0XNC01-7P3.1
hsa-miR-519b-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602455
Biotype: lincRNA
Gene id: ENSG00000270012
Gene Name: LL0XNC01-7P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-73
0.020
1
7mer
2091-2112
0.004
1
6mer
2199-2214
0.004
1
6mer
1019-1034
0.003
3
XLOC_009836
hsa-miR-519b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020518
Biotype: transcript isomorph
Gene id: XLOC_009836
Gene Name: XLOC_009836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
862-883
0.031
2
XLOC_008087
hsa-miR-519b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-164
0.031
1
HAND2-AS1
hsa-miR-519b-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2397-2416
0.011
Not Conserved
6mer
2116-2137
0.011
7
6mer
2200-2216
0.006
4
6mer
242-262
0.003
1
LL22NC03-22D1.1
hsa-miR-519b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
13364-13385
0.003
5
6mer
18736-18754
0.002
2
6mer
7756-7779
0.002
1
6mer
570-584
0.002
0
6mer
1370-1391
0.002
1
6mer
7330-7348
0.002
1
6mer
10210-10234
0.002
0
6mer
18522-18537
0.002
1
6mer
2472-2497
0.002
0
7mer
6465-6484
0.002
Not Conserved
6mer
4580-4598
0.002
1
6mer
8451-8473
0.002
Not Conserved
7mer
3879-3897
0.001
1
6mer
17700-17722
0.001
1
6mer
23947-23970
0.001
0
6mer
27136-27162
0.001
Not Conserved
RP11-214K3.23
hsa-miR-519b-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602347
Biotype: sense_intronic
Gene id: ENSG00000270130
Gene Name: RP11-214K3.23
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-102
0.020
0
7mer
288-308
0.011
2
RP11-734K2.4
hsa-miR-519b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000605233
Biotype: antisense
Gene id: ENSG00000270344
Gene Name: RP11-734K2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7971-7985
0.016
1
7mer
3298-3309
0.008
4
6mer
6743-6756
0.002
0
6mer
3868-3883
0.002
3
6mer
5206-5224
0.002
0
LINC01002
hsa-miR-519b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611361
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-696
0.031
1
LOC102467081
hsa-miR-519b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104662.1
Biotype: sense
Gene id: NR_104662.1 (gene)
Gene Name: LOC102467081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-518
0.017
2
7mer
321-343
0.014
1
XLOC_001668
hsa-miR-519b-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5160-5178
0.015
1
6mer
2385-2407
0.008
1
7mer
5637-5655
0.008
0
RP11-263K4.3
hsa-miR-519b-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-550
0.008
0
6mer
1046-1060
0.006
7
6mer
2462-2488
0.006
4
7mer
711-729
0.005
1
6mer
2768-2786
0.003
0
6mer
2181-2203
0.002
0
XLOC_007765
hsa-miR-519b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-198
0.030
1
CTC-457E21.1
hsa-miR-519b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2708-2724
0.010
0
6mer
25-37
0.009
0
6mer
3068-3086
0.008
0
6mer
1327-1343
0.003
0
RP11-526A4.1
hsa-miR-519b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511993
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-47
0.022
1
6mer
1791-1816
0.005
1
7mer
1243-1263
0.003
0
RP11-410C4.5
hsa-miR-519b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563417
Biotype: lincRNA
Gene id: ENSG00000260505
Gene Name: RP11-410C4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2390-2408
0.015
1
6mer
2676-2694
0.006
1
6mer
825-852
0.005
1
6mer
1927-1953
0.004
1
RP11-588K22.2
hsa-miR-519b-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569449
Biotype: sense_overlapping
Gene id: ENSG00000260244
Gene Name: RP11-588K22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-97
0.021
1
6mer
2142-2167
0.006
3
6mer
1868-1884
0.003
1
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