LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RP11-83A24.2
hsa-miR-519b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610159
Biotype: antisense
Gene id: ENSG00000273247
Gene Name: RP11-83A24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-437
0.011
0
7mer
413-433
0.005
Not Conserved
7mer
237-255
0.005
1
7mer
2510-2532
0.003
0
6mer
4651-4661
0.003
0
7mer
679-697
0.002
1
6mer
5018-5036
0.002
2
7mer
2718-2736
0.001
0
LINC01482
hsa-miR-519b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587999
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
446-455
0.016
2
6mer
505-532
0.010
1
6mer
514-538
0.007
0
RP11-130F10.1
hsa-miR-519b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507023
Biotype: antisense
Gene id: ENSG00000250131
Gene Name: RP11-130F10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2060-2080
0.033
1
RP11-236L14.2
hsa-miR-519b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616608
Biotype: lincRNA
Gene id: ENSG00000273771
Gene Name: RP11-236L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2413-2431
0.024
1
6mer
363-389
0.008
4
LINC01002
hsa-miR-519b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000423687
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-519
0.033
1
RP11-276H19.2
hsa-miR-519b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602579
Biotype: lincRNA
Gene id: ENSG00000269994
Gene Name: RP11-276H19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1261-1286
0.025
2
6mer
565-589
0.004
2
6mer
1576-1590
0.004
0
CASC7
hsa-miR-519b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1057-1067
0.020
11
6mer
8808-8827
0.005
1
7mer
6101-6124
0.003
5
6mer
5704-5724
0.002
4
6mer
6126-6153
0.002
2
SGMS1-AS1
hsa-miR-519b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1117-1136
0.007
1
6mer
12280-12302
0.004
1
7mer
11910-11928
0.004
0
7mer
1762-1778
0.004
1
6mer
1097-1123
0.003
1
7mer
4098-4119
0.003
0
6mer
8148-8163
0.002
3
6mer
10023-10044
0.002
1
6mer
8985-9006
0.002
1
6mer
3170-3184
0.002
1
7mer
2321-2339
0.001
0
RP11-449G16.1
hsa-miR-519b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609671
Biotype: sense_intronic
Gene id: ENSG00000273035
Gene Name: RP11-449G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
446-461
0.033
0
AC018866.1
hsa-miR-519b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444963
Biotype: lincRNA
Gene id: ENSG00000229774
Gene Name: AC018866.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-163
0.033
1
RP11-540O11.4
hsa-miR-519b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560178
Biotype: antisense
Gene id: ENSG00000259521
Gene Name: RP11-540O11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-143
0.033
7
PRICKLE2-AS1
hsa-miR-519b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6005-6025
0.018
0
6mer
947-972
0.004
5
6mer
1510-1526
0.003
5
6mer
1669-1673
0.003
7
7mer
4384-4409
0.002
2
6mer
3604-3624
0.001
6
6mer
3483-3502
0.001
1
GMDS-AS1
hsa-miR-519b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7909-7932
0.007
4
7mer
5222-5242
0.005
1
7mer
7286-7306
0.005
1
6mer
234-250
0.005
2
6mer
7758-7778
0.003
0
6mer
5725-5752
0.002
5
6mer
580-594
0.002
1
7mer
6914-6939
0.002
0
6mer
5621-5641
0.001
1
CKMT2-AS1
hsa-miR-519b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502041
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-478
0.029
1
7mer
850-862
0.004
0
RP4-669L17.10
hsa-miR-519b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-112
0.032
1
RP11-626G11.5
hsa-miR-519b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568971
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-127
0.032
3
GABPB1-AS1
hsa-miR-519b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16137-16154
0.008
2
6mer
9556-9560
0.003
3
7mer
4975-4993
0.003
1
6mer
5510-5532
0.002
3
6mer
15499-15517
0.002
1
6mer
2447-2474
0.002
Not Conserved
7mer
14704-14722
0.002
1
6mer
7321-7339
0.002
1
6mer
8144-8164
0.001
Not Conserved
7mer
12597-12615
0.001
1
7mer
13804-13822
0.001
1
6mer
12014-12032
0.001
1
7mer
11192-11212
0.001
0
7mer
13499-13517
0.001
0
7mer
2014-2032
0.001
0
LINC01301
hsa-miR-519b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506428
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2115-2130
0.016
2
7mer
1630-1648
0.005
1
7mer
240-258
0.005
0
6mer
735-749
0.003
2
6mer
1377-1404
0.003
2
RP5-1014D13.2
hsa-miR-519b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6186-6213
0.005
1
6mer
19355-19381
0.005
2
7mer
5020-5045
0.004
0
6mer
8194-8206
0.002
1
6mer
18652-18678
0.002
2
7mer
6607-6612
0.001
0
6mer
4523-4547
0.001
1
7mer
7505-7523
0.001
0
7mer
7170-7191
0.001
0
6mer
9510-9531
0.001
0
7mer
10160-10178
0.001
0
6mer
17693-17718
0.001
2
7mer
5898-5916
0.001
0
7mer
11201-11219
0.001
0
7mer
3092-3110
0.001
0
6mer
6888-6906
0.001
Not Conserved
6mer
9782-9800
0.001
0
RP11-126K15.1
hsa-miR-519b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578740
Biotype: lincRNA
Gene id: ENSG00000265380
Gene Name: RP11-126K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-36
0.032
4
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