LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
SNHG14
hsa-miR-519b-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3722-3746
0.012
1
6mer
8493-8511
0.005
1
7mer
8574-8592
0.004
1
6mer
7864-7881
0.003
1
6mer
4772-4793
0.003
1
6mer
4409-4423
0.002
0
6mer
5988-6007
0.002
1
6mer
6127-6151
0.001
1
6mer
6036-6060
0.001
1
RP11-389G6.4
hsa-miR-519b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000624061
Biotype: antisense
Gene id: ENSG00000279658
Gene Name: RP11-389G6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-90
0.034
1
TTN-AS1
hsa-miR-519b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-500
0.015
9
7mer
836-860
0.015
8
6mer
774-797
0.004
2
RP11-342K6.2
hsa-miR-519b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604219
Biotype: sense_intronic
Gene id: ENSG00000271452
Gene Name: RP11-342K6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-161
0.034
5
RP11-7K24.3
hsa-miR-519b-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562471
Biotype: lincRNA
Gene id: ENSG00000261068
Gene Name: RP11-7K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1608-1628
0.012
1
7mer
1660-1673
0.011
1
6mer
55-81
0.005
0
7mer
1374-1392
0.004
1
6mer
1096-1113
0.002
Not Conserved
XLOC_012613
hsa-miR-519b-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026244
Biotype: transcript isomorph
Gene id: XLOC_012613
Gene Name: XLOC_012613
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-469
0.034
0
RP11-96K19.2
hsa-miR-519b-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440689
Biotype: antisense
Gene id: ENSG00000232811
Gene Name: RP11-96K19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2108-2127
0.034
6
FLJ42351
hsa-miR-519b-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457336
Biotype: lincRNA
Gene id: ENSG00000237753
Gene Name: FLJ42351
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1647-1664
0.029
5
7mer
1863-1878
0.004
1
RP11-8P13.5
hsa-miR-519b-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617667
Biotype: sense_intronic
Gene id: ENSG00000274976
Gene Name: RP11-8P13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-355
0.034
2
GJA9-MYCBP
hsa-miR-519b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037634.1
Biotype: sense
Gene id: NR_037634.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3646-3669
0.018
5
6mer
274-299
0.006
3
6mer
3445-3460
0.005
6
6mer
1668-1686
0.002
7
7mer
2634-2660
0.002
1
LOC646736
hsa-miR-519b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046102.1
Biotype: lincRNA
Gene id: NR_046102.1 (gene)
Gene Name: LOC646736
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
922-934
0.033
1
ZFAT-AS1
hsa-miR-519b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505776
Biotype: antisense
Gene id: ENSG00000248492
Gene Name: ZFAT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
893-899
0.033
6
CTA-212A2.4
hsa-miR-519b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623420
Biotype: lincRNA
Gene id: ENSG00000279927
Gene Name: CTA-212A2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-28
0.018
2
7mer
409-431
0.006
1
7mer
1692-1714
0.004
1
6mer
3245-3263
0.003
1
6mer
2052-2069
0.002
1
7mer
1492-1510
0.001
0
RP1-20B11.2
hsa-miR-519b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430842
Biotype: antisense
Gene id: ENSG00000230433
Gene Name: RP1-20B11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-431
0.033
0
C17orf100
hsa-miR-519b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000542475
Biotype: lincRNA
Gene id: ENSG00000256806
Gene Name: C17orf100
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1318-1331
0.029
0
6mer
1521-1540
0.004
0
XLOC_002173
hsa-miR-519b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004315
Biotype: transcript isomorph
Gene id: XLOC_002173
Gene Name: XLOC_002173
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-140
0.025
1
6mer
103-123
0.008
1
HOTAIRM1
hsa-miR-519b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
731-747
0.024
8
6mer
733-760
0.009
7
AC007750.5
hsa-miR-519b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418968
Biotype: antisense
Gene id: ENSG00000236841
Gene Name: AC007750.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3372-3392
0.022
0
8mer
1468-1489
0.006
0
6mer
3083-3099
0.004
0
6mer
1561-1565
0.001
3
RP11-91K9.1
hsa-miR-519b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000434309
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-228
0.033
1
LOC90784
hsa-miR-519b-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026984.1
Biotype: sense
Gene id: NR_026984.1 (gene)
Gene Name: LOC90784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
739-756
0.029
1
7mer
2626-2646
0.004
0
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