LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-519b-3p


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Gene
miRNA
Score
DIANA Links
RP11-180I4.2
hsa-miR-519b-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000580326
Biotype: lincRNA
Gene id: ENSG00000228142
Gene Name: RP11-180I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-126
0.037
1
LINC01002
hsa-miR-519b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622859
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-514
0.037
1
RP11-374M1.2
hsa-miR-519b-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-173
0.027
1
7mer
1280-1298
0.010
0
FRMD6-AS1
hsa-miR-519b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617151
Biotype: antisense
Gene id: ENSG00000273888
Gene Name: FRMD6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-171
0.033
0
7mer
511-538
0.003
1
7mer
1141-1159
0.001
Not Conserved
RP11-34P13.14
hsa-miR-519b-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000493797
Biotype: antisense
Gene id: ENSG00000239906
Gene Name: RP11-34P13.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-131
0.037
1
XLOC_002612
hsa-miR-519b-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005982
Biotype: transcript isomorph
Gene id: XLOC_002612
Gene Name: XLOC_002612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1187-1210
0.019
0
8mer
164-185
0.018
0
RP11-546O6.4
hsa-miR-519b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562653
Biotype: lincRNA
Gene id: ENSG00000260677
Gene Name: RP11-546O6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1387-1409
0.025
0
7mer
1042-1062
0.006
1
6mer
1454-1480
0.005
1
RP11-620J15.2
hsa-miR-519b-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-90
0.037
5
XLOC_010101
hsa-miR-519b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020255
Biotype: transcript isomorph
Gene id: XLOC_010101
Gene Name: XLOC_010101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-89
0.037
5
RP11-420K14.8
hsa-miR-519b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593824
Biotype: lincRNA
Gene id: ENSG00000268184
Gene Name: RP11-420K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-523
0.036
0
XLOC_000782
hsa-miR-519b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2281-2301
0.036
0
LINC00645
hsa-miR-519b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-603
0.024
0
7mer
2378-2398
0.004
1
6mer
1344-1348
0.003
2
6mer
2013-2039
0.002
1
6mer
621-647
0.002
1
6mer
2099-2120
0.002
3
LINC01002
hsa-miR-519b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614996
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
974-988
0.036
1
RP11-326C3.11
hsa-miR-519b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602429
Biotype: antisense
Gene id: ENSG00000251661
Gene Name: RP11-326C3.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
669-680
0.031
Not Conserved
6mer
279-302
0.005
0
RP11-458K10.1
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471672
Biotype: lincRNA
Gene id: ENSG00000242072
Gene Name: RP11-458K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-648
0.030
3
6mer
13-27
0.006
1
RP11-806L2.2
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585150
Biotype: antisense
Gene id: ENSG00000266456
Gene Name: RP11-806L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-36
0.034
0
7mer
921-939
0.002
1
CTC-529L17.2
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503489
Biotype: lincRNA
Gene id: ENSG00000249984
Gene Name: CTC-529L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-185
0.021
2
8mer
170-185
0.015
0
MGC27345
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9380-9396
0.008
1
9mer
7697-7721
0.007
2
7mer
9500-9518
0.006
1
7mer
4215-4230
0.003
1
6mer
8830-8851
0.003
1
7mer
7900-7918
0.002
1
6mer
2530-2538
0.002
1
6mer
4088-4111
0.002
3
6mer
3695-3707
0.002
1
6mer
5508-5532
0.002
1
RP11-91K9.1
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-312
0.031
1
7mer
107-120
0.005
0
NAV2-AS5
hsa-miR-519b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-519b-3p
Sequence: aaagugcauccuuuuagagguu
MirBase ID: MIMAT0002837
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3279-3293
0.034
3
6mer
1906-1930
0.002
Not Conserved
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