LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
TCL6
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000484207
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
6mer
3638-3658
0.004
2
6mer
484-508
0.002
1
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
RP11-770J1.5
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531742
Biotype: antisense
Gene id: ENSG00000254873
Gene Name: RP11-770J1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1422
0.021
6
6mer
1387-1391
0.004
8
LINC00277
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000435479
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
426-443
0.011
7
6mer
716-720
0.004
0
6mer
566-584
0.004
2
6mer
525-538
0.003
2
6mer
474-498
0.002
2
SRD5A3-AS1
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598819
Biotype: antisense
Gene id: ENSG00000249700
Gene Name: SRD5A3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-497
0.025
1
CTC-347C20.2
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506293
Biotype: lincRNA
Gene id: ENSG00000248371
Gene Name: CTC-347C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-455
0.021
2
6mer
144-164
0.003
1
SEC24B-AS1
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499713
Biotype: antisense
Gene id: ENSG00000247950
Gene Name: SEC24B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
654-678
0.014
0
6mer
498-509
0.004
3
6mer
811-826
0.004
1
6mer
1286-1308
0.002
0
XLOC_009608
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020155
Biotype: transcript isomorph
Gene id: XLOC_009608
Gene Name: XLOC_009608
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-38
0.021
1
6mer
242-264
0.003
1
TCL6
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000497248
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
6mer
3781-3801
0.004
1
6mer
484-508
0.003
1
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
RP11-35G9.3
hsa-miR-4677-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592201
Biotype: antisense
Gene id: ENSG00000267040
Gene Name: RP11-35G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-112
0.022
1
8mer+mismatch
613-633
0.002
0
JAKMIP2-AS1
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038902.1
Biotype: antisense
Gene id: NR_038902.1 (gene)
Gene Name: JAKMIP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1857-1878
0.016
1
6mer
1649-1666
0.005
1
7mer
1212-1225
0.003
3
6mer
1112-1132
0.002
1
XLOC_002241
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003356
Biotype: transcript isomorph
Gene id: XLOC_002241
Gene Name: XLOC_002241
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-69
0.021
1
7mer
611-623
0.004
1
AC004593.3
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446246
Biotype: antisense
Gene id: ENSG00000235669
Gene Name: AC004593.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-68
0.025
0
RGS5
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427213
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
395-419
0.025
2
PRNCR1
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2418-2428
0.008
0
7mer
1188-1193
0.007
1
6mer
804-827
0.003
2
6mer
4806-4828
0.002
1
6mer
9028-9042
0.001
2
6mer
4317-4335
0.001
2
6mer
10715-10737
0.001
0
6mer
6533-6546
0.001
0
6mer
1196-1201
0.001
1
XLOC_011724
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024290
Biotype: transcript isomorph
Gene id: XLOC_011724
Gene Name: XLOC_011724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-56
0.015
2
6mer
2625-2637
0.006
3
6mer
2412-2418
0.003
1
6mer
1075-1099
0.002
2
CTD-2292P10.4
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520572
Biotype: antisense
Gene id: ENSG00000253741
Gene Name: CTD-2292P10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-191
0.011
1
7mer
3749-3761
0.006
1
7mer
4289-4304
0.005
1
6mer
527-544
0.003
2
XLOC_010272
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021010
Biotype: transcript isomorph
Gene id: XLOC_010272
Gene Name: XLOC_010272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-222
0.025
0
RP13-631K18.2
hsa-miR-4677-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531559
Biotype: lincRNA
Gene id: ENSG00000254486
Gene Name: RP13-631K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2688-2709
0.014
1
7mer
218-223
0.010
0
LOC100507346
hsa-miR-4677-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_038982.1
Biotype: antisense
Gene id: NR_038982.1 (gene)
Gene Name: LOC100507346
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1689-1702
0.019
0
7mer
114-138
0.006
0
RP11-504P24.8
hsa-miR-4677-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1470-1485
0.008
1
7mer
266-280
0.006
0
7mer
542-552
0.004
Not Conserved
6mer
1545-1549
0.004
0
7mer
510-524
0.002
Not Conserved
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