LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010654
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022050
Biotype: transcript isomorph
Gene id: XLOC_010654
Gene Name: XLOC_010654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-75
0.017
1
6mer
88-93
0.007
3
LINC00683
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578803
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1244-1261
0.013
1
7mer
1291-1308
0.005
1
6mer
426-452
0.004
1
6mer
199-221
0.004
1
LINC01440
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000596828
Biotype: lincRNA
Gene id: ENSG00000235166
Gene Name: LINC01440
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-158
0.016
4
6mer
750-773
0.006
1
6mer
506-524
0.003
0
RP11-396B14.2
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572466
Biotype: lincRNA
Gene id: ENSG00000263033
Gene Name: RP11-396B14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-348
0.011
0
6mer
900-921
0.006
1
6mer
142-151
0.004
1
6mer
643-658
0.004
1
RGS5
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528019
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
141-165
0.025
2
RP4-555D20.2
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1912-1918
0.007
0
8mer
2353-2366
0.005
1
7mer
3782-3792
0.005
2
8mer
2608-2625
0.004
2
6mer
100-113
0.002
1
6mer
2511-2532
0.001
1
6mer
2184-2203
0.001
Not Conserved
6mer
2226-2243
0.001
1
RP11-65M17.1
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525984
Biotype: lincRNA
Gene id: ENSG00000255484
Gene Name: RP11-65M17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-54
0.014
2
6mer
1315-1319
0.004
1
6mer
1766-1789
0.003
1
6mer
1643-1659
0.003
0
RP11-315D16.4
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612894
Biotype: lincRNA
Gene id: ENSG00000260657
Gene Name: RP11-315D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-429
0.025
0
RP11-88I18.2
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590767
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2370-2395
0.007
5
6mer
952-967
0.006
6
6mer
2148-2174
0.004
3
6mer
1648-1671
0.003
2
6mer
1624-1628
0.003
6
6mer
1473-1477
0.002
3
XLOC_006661
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014015
Biotype: transcript isomorph
Gene id: XLOC_006661
Gene Name: XLOC_006661
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
832-855
0.004
0
6mer
208-212
0.003
Not Conserved
6mer
185-189
0.003
Not Conserved
6mer
343-347
0.003
Not Conserved
6mer
318-322
0.002
Not Conserved
6mer
578-582
0.002
Not Conserved
6mer
243-247
0.002
Not Conserved
6mer
381-385
0.002
Not Conserved
6mer
429-433
0.002
Not Conserved
6mer
509-513
0.002
Not Conserved
XLOC_007858
hsa-miR-4677-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015886
Biotype: transcript isomorph
Gene id: XLOC_007858
Gene Name: XLOC_007858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3199-3214
0.008
0
7mer
4867-4879
0.007
1
7mer
4502-4519
0.006
1
6mer
2816-2826
0.002
2
6mer
569-589
0.001
0
6mer
3471-3492
0.001
1
RP11-545P7.9
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622440
Biotype: sense_intronic
Gene id: ENSG00000277566
Gene Name: RP11-545P7.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-575
0.021
0
6mer
369-385
0.004
1
RP11-25G10.2
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433455
Biotype: antisense
Gene id: ENSG00000232739
Gene Name: RP11-25G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-509
0.025
1
XLOC_001651
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003846
Biotype: transcript isomorph
Gene id: XLOC_001651
Gene Name: XLOC_001651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-293
0.025
1
XLOC_012626
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026282
Biotype: transcript isomorph
Gene id: XLOC_012626
Gene Name: XLOC_012626
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
755-761
0.014
1
7mer
1016-1041
0.005
0
6mer
1549-1570
0.003
3
6mer
1646-1669
0.003
6
AC010975.1
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443301
Biotype: antisense
Gene id: ENSG00000229385
Gene Name: AC010975.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-406
0.025
1
RP11-805I24.1
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563931
Biotype: lincRNA
Gene id: ENSG00000261177
Gene Name: RP11-805I24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1548-1565
0.005
0
8mer
2165-2176
0.004
1
6mer
299-313
0.004
1
6mer
6912-6917
0.003
1
6mer
314-341
0.002
1
6mer
918-937
0.002
0
6mer
4224-4244
0.002
0
6mer
6286-6309
0.002
Not Conserved
6mer
2769-2780
0.001
Not Conserved
RP11-2O17.2
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505623
Biotype: antisense
Gene id: ENSG00000248529
Gene Name: RP11-2O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1169-1183
0.018
1
8mer
862-884
0.007
3
LINC01020
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507599
Biotype: lincRNA
Gene id: ENSG00000215231
Gene Name: LINC01020
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-398
0.025
2
DIO3OS
hsa-miR-4677-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556120
Biotype: lincRNA
Gene id: ENSG00000258498
Gene Name: DIO3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
737-758
0.015
0
7mer
1604-1610
0.007
0
6mer
2128-2148
0.003
0
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