LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-661O13.1
hsa-miR-4677-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580267
Biotype: antisense
Gene id: ENSG00000266708
Gene Name: RP11-661O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-740
0.021
8
8mer
641-659
0.005
0
TARID
hsa-miR-4677-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419627
Biotype: antisense
Gene id: ENSG00000227954
Gene Name: TARID
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-71
0.019
3
6mer
110-124
0.006
2
DIO3OS
hsa-miR-4677-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002770.1
Biotype: lincRNA
Gene id: NR_002770.1 (gene)
Gene Name: DIO3OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
737-758
0.015
0
7mer
1604-1610
0.005
0
6mer
3109-3129
0.003
0
6mer
2114-2140
0.001
1
7mer
2098-2121
0.001
2
DLX6-AS1
hsa-miR-4677-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13228-13254
0.006
1
7mer
5703-5711
0.005
5
8mer
3631-3646
0.003
2
7mer
6239-6256
0.002
0
6mer
7558-7580
0.002
5
6mer
6730-6743
0.001
1
6mer
11901-11924
0.001
1
6mer
4970-4974
0.001
1
6mer
3710-3722
0.001
2
6mer
13476-13498
0.001
1
LINC01505
hsa-miR-4677-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000411451
Biotype: lincRNA
Gene id: ENSG00000234229
Gene Name: LINC01505
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
201-214
0.015
10
6mer
389-395
0.010
7
AC092159.3
hsa-miR-4677-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439196
Biotype: antisense
Gene id: ENSG00000233970
Gene Name: AC092159.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
316-320
0.014
1
6mer
243-268
0.011
1
HOTAIR
hsa-miR-4677-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000425595
Biotype: antisense
Gene id: ENSG00000228630
Gene Name: HOTAIR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-162
0.025
2
RP11-7O11.3
hsa-miR-4677-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412378
Biotype: antisense
Gene id: ENSG00000237950
Gene Name: RP11-7O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-371
0.025
0
RP11-333I13.1
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568862
Biotype: lincRNA
Gene id: ENSG00000260977
Gene Name: RP11-333I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-376
0.011
0
7mer
1824-1847
0.007
1
7mer
941-965
0.004
0
6mer
1098-1104
0.002
2
6mer
451-470
0.002
0
RP11-143A12.3
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506655
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2231-2248
0.025
0
XLOC_005751
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011222
Biotype: transcript isomorph
Gene id: XLOC_005751
Gene Name: XLOC_005751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
975-988
0.009
1
7mer
565-587
0.007
0
6mer
18-22
0.006
0
6mer
1415-1431
0.003
1
AC020743.3
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457592
Biotype: lincRNA
Gene id: ENSG00000231681
Gene Name: AC020743.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-170
0.019
1
6mer
53-77
0.006
2
LOC100287010
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037885.2
Biotype: lincRNA
Gene id: NR_037885.2 (gene)
Gene Name: LOC100287010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-382
0.013
2
6mer
1043-1063
0.009
6
6mer
167-181
0.003
0
RP11-307P5.1
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434985
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-146
0.025
4
XLOC_010460
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021865
Biotype: transcript isomorph
Gene id: XLOC_010460
Gene Name: XLOC_010460
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1267-1272
0.011
3
7mer
469-493
0.007
1
6mer
1476-1483
0.007
3
RP11-421F16.3
hsa-miR-4677-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500632
Biotype: antisense
Gene id: ENSG00000247903
Gene Name: RP11-421F16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2108-2132
0.018
1
7mer
1309-1317
0.007
1
LOC90784
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026984.1
Biotype: sense
Gene id: NR_026984.1 (gene)
Gene Name: LOC90784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1463-1481
0.008
1
7mer
274-300
0.008
1
7mer
3024-3043
0.006
1
6mer
1121-1133
0.002
1
6mer
1665-1685
0.001
1
RP11-84D1.1
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456316
Biotype: antisense
Gene id: ENSG00000229162
Gene Name: RP11-84D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-204
0.015
0
6mer
543-554
0.004
1
6mer
648-670
0.004
1
6mer
554-572
0.002
1
XLOC_010418
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021818
Biotype: transcript isomorph
Gene id: XLOC_010418
Gene Name: XLOC_010418
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-115
0.025
0
FAM138C
hsa-miR-4677-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449442
Biotype: lincRNA
Gene id: ENSG00000218839
Gene Name: FAM138C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-569
0.022
1
6mer
502-520
0.003
2
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