LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
CTD-2256P15.1
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509915
Biotype: antisense
Gene id: ENSG00000248968
Gene Name: CTD-2256P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-203
0.025
1
RP11-15N24.4
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000569034
Biotype: sense_overlapping
Gene id: ENSG00000261533
Gene Name: RP11-15N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-202
0.020
0
6mer
475-495
0.003
0
6mer
930-946
0.003
1
LINC00612
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_034140.1
Biotype: lincRNA
Gene id: NR_034140.1 (gene)
Gene Name: LINC00612
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
145-149
0.009
7
7mer
697-717
0.008
0
7mer
1142-1161
0.005
0
6mer
1541-1564
0.002
0
6mer
682-697
0.001
Not Conserved
LOC730101
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024405.1
Biotype: lincRNA
Gene id: NR_024405.1 (gene)
Gene Name: LOC730101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3350-3359
0.017
4
7mer
2736-2753
0.007
1
6mer
1519-1532
0.001
0
LINC00612
hsa-miR-4677-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538094
Biotype: processed_transcript
Gene id: ENSG00000214851
Gene Name: LINC00612
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-152
0.009
7
7mer
700-720
0.008
0
7mer
1145-1164
0.005
0
6mer
1544-1567
0.002
0
6mer
685-700
0.001
Not Conserved
RP11-304L19.2
hsa-miR-4677-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562027
Biotype: antisense
Gene id: ENSG00000260447
Gene Name: RP11-304L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-101
0.025
8
RP11-73M7.6
hsa-miR-4677-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585413
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-145
0.023
2
6mer
622-641
0.002
Not Conserved
AC006458.3
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445093
Biotype: lincRNA
Gene id: ENSG00000227489
Gene Name: AC006458.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-399
0.022
1
6mer
435-447
0.004
0
XLOC_010007
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020166
Biotype: transcript isomorph
Gene id: XLOC_010007
Gene Name: XLOC_010007
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
144-148
0.009
7
7mer
696-716
0.008
0
7mer
1141-1160
0.005
0
6mer
1540-1563
0.002
0
6mer
681-696
0.001
Not Conserved
RP3-406A7.7
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564248
Biotype: lincRNA
Gene id: ENSG00000260418
Gene Name: RP3-406A7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-272
0.019
1
6mer
57-67
0.006
1
CTD-2325B11.1
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507299
Biotype: lincRNA
Gene id: ENSG00000249837
Gene Name: CTD-2325B11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-278
0.020
1
6mer
149-168
0.006
3
AC074391.1
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412986
Biotype: lincRNA
Gene id: ENSG00000204929
Gene Name: AC074391.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-43
0.025
3
XLOC_008855
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018537
Biotype: transcript isomorph
Gene id: XLOC_008855
Gene Name: XLOC_008855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-270
0.013
1
7mer
169-188
0.006
0
6mer
105-109
0.006
2
RP11-418J17.1
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418015
Biotype: antisense
Gene id: ENSG00000231365
Gene Name: RP11-418J17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1003-1021
0.021
3
6mer
1074-1086
0.004
1
LINC00265
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448955
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
428-442
0.014
1
6mer
311-325
0.006
0
6mer
167-189
0.005
0
KB-1125A3.11
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609825
Biotype: antisense
Gene id: ENSG00000272973
Gene Name: KB-1125A3.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-305
0.022
1
6mer
409-424
0.004
0
RP11-728K20.2
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000565102
Biotype: lincRNA
Gene id: ENSG00000260555
Gene Name: RP11-728K20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
843-859
0.013
0
6mer
290-308
0.003
1
6mer
541-553
0.003
1
6mer
659-684
0.003
0
6mer
2336-2348
0.002
Not Conserved
6mer
1555-1559
0.001
1
RP11-122A21.2
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504175
Biotype: antisense
Gene id: ENSG00000250267
Gene Name: RP11-122A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1576-1601
0.019
1
7mer
543-554
0.006
0
LINC00923
hsa-miR-4677-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619015
Biotype: lincRNA
Gene id: ENSG00000251209
Gene Name: LINC00923
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-19
0.021
1
6mer
324-351
0.004
1
XLOC_007895
hsa-miR-4677-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016506
Biotype: transcript isomorph
Gene id: XLOC_007895
Gene Name: XLOC_007895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9671-9676
0.013
3
6mer
9522-9533
0.003
1
7mer
7534-7560
0.003
0
6mer
373-391
0.002
0
6mer
1002-1009
0.002
0
6mer
6712-6739
0.001
1
6mer
3784-3788
0.001
0
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