LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008435
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018705
Biotype: transcript isomorph
Gene id: XLOC_008435
Gene Name: XLOC_008435
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-361
0.009
0
7mer
526-552
0.008
Not Conserved
7mer
1596-1615
0.004
0
6mer
516-540
0.003
0
6mer
1828-1852
0.002
1
RP11-429G19.3
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433113
Biotype: sense_intronic
Gene id: ENSG00000240527
Gene Name: RP11-429G19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-202
0.026
1
AC002429.5
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417881
Biotype: antisense
Gene id: ENSG00000236197
Gene Name: AC002429.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2250-2273
0.013
2
6mer
2427-2442
0.005
1
6mer
851-864
0.004
2
8mer
1516-1537
0.003
Not Conserved
RP11-27K13.3
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445523
Biotype: antisense
Gene id: ENSG00000236137
Gene Name: RP11-27K13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-158
0.016
5
7mer
1194-1216
0.006
1
6mer
1719-1730
0.003
Not Conserved
MEG3
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521256
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-414
0.026
5
XLOC_003440
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
878-896
0.014
0
7mer
1758-1767
0.006
1
6mer
1158-1174
0.003
1
6mer
2517-2530
0.003
0
XLOC_000303
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001038
Biotype: transcript isomorph
Gene id: XLOC_000303
Gene Name: XLOC_000303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2533-2538
0.015
4
6mer
2271-2293
0.003
3
6mer
817-822
0.003
1
6mer
665-674
0.003
1
6mer
2166-2179
0.002
4
XLOC_000927
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001601
Biotype: transcript isomorph
Gene id: XLOC_000927
Gene Name: XLOC_000927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
621-626
0.025
4
XLOC_002517
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002680
Biotype: transcript isomorph
Gene id: XLOC_002517
Gene Name: XLOC_002517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3456-3472
0.008
0
7mer
2956-2968
0.005
1
7mer
3782-3803
0.004
1
7mer
1014-1037
0.003
0
6mer
2427-2452
0.002
0
6mer
3165-3184
0.001
0
6mer
2354-2368
0.001
1
6mer
2118-2140
0.001
1
RP11-899L11.3
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562873
Biotype: antisense
Gene id: ENSG00000261651
Gene Name: RP11-899L11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-190
0.023
1
6mer
161-179
0.002
0
RP11-57H12.5
hsa-miR-4677-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624135
Biotype: antisense
Gene id: ENSG00000228852
Gene Name: RP11-57H12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-274
0.022
0
6mer
482-504
0.003
1
RP11-410N8.4
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000375670
Biotype: lincRNA
Gene id: ENSG00000204393
Gene Name: RP11-410N8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-29
0.017
1
7mer
312-337
0.005
1
7mer
292-313
0.003
0
RP11-307P5.1
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432506
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-139
0.025
4
CTB-158D10.3
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000377652
Biotype: antisense
Gene id: ENSG00000204850
Gene Name: CTB-158D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-68
0.016
3
6mer
1798-1811
0.006
1
6mer
1599-1612
0.003
1
MCHR2-AS1
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452482
Biotype: antisense
Gene id: ENSG00000229315
Gene Name: MCHR2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
467-472
0.025
2
XLOC_010692
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022085
Biotype: transcript isomorph
Gene id: XLOC_010692
Gene Name: XLOC_010692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-109
0.012
1
6mer
133-154
0.005
1
6mer
115-131
0.005
1
6mer
98-110
0.004
1
AC100830.3
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560387
Biotype: antisense
Gene id: ENSG00000259635
Gene Name: AC100830.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1108-1129
0.021
1
6mer
827-843
0.004
5
XLOC_004517
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
706-713
0.019
1
6mer
173-190
0.004
1
6mer
1263-1268
0.003
1
RP11-69H14.6
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558896
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-183
0.018
1
7mer
777-795
0.005
0
7mer
1130-1149
0.002
3
RP11-541P9.3
hsa-miR-4677-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000458002
Biotype: antisense
Gene id: ENSG00000250061
Gene Name: RP11-541P9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-117
0.025
5
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