LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
HCG18
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000413358
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-381
0.019
1
6mer
166-191
0.004
1
6mer
172-191
0.002
0
RP11-73M7.6
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000589462
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-135
0.023
2
6mer
571-590
0.002
Not Conserved
XLOC_012552
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025731
Biotype: transcript isomorph
Gene id: XLOC_012552
Gene Name: XLOC_012552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-406
0.022
3
6mer
299-303
0.004
0
XLOC_001635
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003823
Biotype: transcript isomorph
Gene id: XLOC_001635
Gene Name: XLOC_001635
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2306-2317
0.011
1
7mer
2170-2175
0.008
0
6mer
2616-2621
0.007
1
FAM138F
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586011
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-564
0.023
0
6mer
500-518
0.003
1
RP11-408N14.1
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435092
Biotype: lincRNA
Gene id: ENSG00000236921
Gene Name: RP11-408N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-271
0.026
3
XLOC_007276
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015913
Biotype: transcript isomorph
Gene id: XLOC_007276
Gene Name: XLOC_007276
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-638
0.026
1
TCL6
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000467865
Biotype: lincRNA
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
6mer
3393-3405
0.005
2
6mer
484-508
0.002
1
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
PWRN1
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568019
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-293
0.026
1
AP000997.2
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6694-6709
0.005
9
6mer
8268-8272
0.004
1
6mer
6844-6858
0.004
9
7mer
4827-4843
0.003
1
6mer
7621-7625
0.003
1
6mer
5367-5383
0.002
5
6mer
2482-2500
0.001
1
6mer
1931-1949
0.001
1
6mer
4560-4577
0.001
Not Conserved
MIR4435-1HG
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431385
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-521
0.016
1
6mer
748-770
0.010
5
ENOX1-AS1
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3872-3879
0.017
1
6mer
2946-2951
0.003
1
7mer
3010-3032
0.002
2
6mer
1039-1043
0.002
0
6mer
2981-2996
0.001
1
RP11-80A15.1
hsa-miR-4677-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555109
Biotype: antisense
Gene id: ENSG00000258744
Gene Name: RP11-80A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-129
0.022
2
6mer
36-50
0.004
1
CTD-3060P21.1
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574885
Biotype: antisense
Gene id: ENSG00000262884
Gene Name: CTD-3060P21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-158
0.011
0
7mer
1926-1933
0.009
2
7mer
260-274
0.004
1
6mer
773-789
0.001
0
RP11-380O24.1
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491930
Biotype: antisense
Gene id: ENSG00000254485
Gene Name: RP11-380O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-551
0.026
0
RP11-692D12.1
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502790
Biotype: antisense
Gene id: ENSG00000250220
Gene Name: RP11-692D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-369
0.014
3
7mer
188-214
0.012
1
XLOC_012999
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027503
Biotype: transcript isomorph
Gene id: XLOC_012999
Gene Name: XLOC_012999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-155
0.026
0
RP11-124I4.2
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421465
Biotype: antisense
Gene id: ENSG00000228231
Gene Name: RP11-124I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-164
0.026
1
NNT-AS1
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_073113.1
Biotype: antisense
Gene id: NR_073113.1 (gene)
Gene Name: NNT-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-91
0.019
1
6mer
141-153
0.005
1
6mer
1414-1429
0.001
0
RP11-705O1.8
hsa-miR-4677-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581677
Biotype: lincRNA
Gene id: ENSG00000263884
Gene Name: RP11-705O1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
414-422
0.019
1
7mer
1427-1441
0.006
0
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