LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
MIR503HG
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000414769
Biotype: lincRNA
Gene id: ENSG00000223749
Gene Name: MIR503HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-85
0.012
0
6mer
450-468
0.007
5
6mer
30-34
0.006
3
AC093590.1
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419243
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
238-254
0.018
0
6mer
14-28
0.005
1
6mer
643-661
0.003
2
LINC00939
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000507313
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2726-2746
0.019
1
7mer
701-721
0.007
0
CTD-2303H24.2
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000420856
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-149
0.023
0
6mer
383-393
0.002
Not Conserved
XLOC_009832
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020515
Biotype: transcript isomorph
Gene id: XLOC_009832
Gene Name: XLOC_009832
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
803-828
0.022
3
6mer
246-264
0.004
0
RP11-223P11.2
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420941
Biotype: antisense
Gene id: ENSG00000232935
Gene Name: RP11-223P11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
699-716
0.021
7
7mer
462-478
0.005
Not Conserved
HCG18
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3767-3782
0.017
1
7mer
2115-2130
0.003
2
6mer
3338-3349
0.002
1
6mer
3567-3592
0.002
1
6mer
3573-3592
0.002
0
XLOC_006933
hsa-miR-4677-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014864
Biotype: transcript isomorph
Gene id: XLOC_006933
Gene Name: XLOC_006933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2574-2601
0.010
0
6mer
146-160
0.006
1
7mer
992-1002
0.004
2
6mer
2402-2428
0.003
1
7mer
1336-1341
0.002
Not Conserved
6mer
2433-2437
0.001
1
LL22NC03-27C5.1
hsa-miR-4677-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624219
Biotype: lincRNA
Gene id: ENSG00000278890
Gene Name: LL22NC03-27C5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4107-4121
0.012
0
7mer
1776-1796
0.008
3
6mer
4909-4932
0.002
Not Conserved
6mer
4965-4982
0.001
0
6mer
4227-4245
0.001
1
6mer
1885-1896
0.001
1
RP11-140I24.1
hsa-miR-4677-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000555721
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-310
0.026
0
RP11-507B12.1
hsa-miR-4677-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560686
Biotype: lincRNA
Gene id: ENSG00000259675
Gene Name: RP11-507B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-147
0.015
1
6mer
67-86
0.011
8
RP11-384P14.1
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547795
Biotype: lincRNA
Gene id: ENSG00000257124
Gene Name: RP11-384P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-342
0.022
1
6mer
116-132
0.004
2
LOC284581
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2087-2097
0.011
0
7mer
1153-1180
0.011
0
6mer
1269-1296
0.003
1
6mer
1226-1247
0.002
0
RP11-300A12.2
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567616
Biotype: lincRNA
Gene id: ENSG00000259814
Gene Name: RP11-300A12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-49
0.020
0
6mer
1494-1519
0.006
0
PSMD6-AS2
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472046
Biotype: antisense
Gene id: ENSG00000239653
Gene Name: PSMD6-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2273-2299
0.022
2
6mer
2136-2143
0.003
2
LINC01307
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444327
Biotype: lincRNA
Gene id: ENSG00000231671
Gene Name: LINC01307
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-431
0.015
0
7mer
141-160
0.011
1
RP11-393J16.4
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412789
Biotype: lincRNA
Gene id: ENSG00000226447
Gene Name: RP11-393J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
404-430
0.018
0
6mer
280-284
0.008
2
PROX1-AS1
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000601854
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
347-374
0.013
3
7mer
156-162
0.013
0
RP11-73M7.6
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609033
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-135
0.023
2
6mer
668-687
0.003
Not Conserved
AC004012.1
hsa-miR-4677-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416593
Biotype: lincRNA
Gene id: ENSG00000233942
Gene Name: AC004012.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-218
0.021
3
6mer
69-73
0.004
1
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