LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-507B12.1
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559590
Biotype: lincRNA
Gene id: ENSG00000259675
Gene Name: RP11-507B12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-121
0.015
1
6mer
41-60
0.011
8
CTA-243E7.1
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9461-9467
0.006
3
7mer
12809-12827
0.004
0
6mer
4804-4822
0.002
1
6mer
9241-9268
0.002
2
6mer
10784-10790
0.002
1
6mer
4115-4121
0.002
1
6mer
1277-1300
0.002
1
6mer
11714-11738
0.002
1
6mer
2331-2335
0.001
0
6mer
6630-6648
0.001
1
6mer
5190-5216
0.001
2
6mer
9197-9222
0.001
0
RP11-260A9.6
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580686
Biotype: lincRNA
Gene id: ENSG00000264734
Gene Name: RP11-260A9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-343
0.026
0
TTN-AS1
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589487
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-466
0.013
3
6mer
226-231
0.007
2
7mer
611-627
0.006
1
AC140912.1
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577171
Biotype: lincRNA
Gene id: ENSG00000261227
Gene Name: AC140912.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-607
0.016
6
6mer
372-398
0.005
8
6mer
811-828
0.004
1
RP11-328C8.5
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547898
Biotype: sense_intronic
Gene id: ENSG00000258068
Gene Name: RP11-328C8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-257
0.026
1
XLOC_008661
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017681
Biotype: transcript isomorph
Gene id: XLOC_008661
Gene Name: XLOC_008661
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3357-3382
0.010
0
8mer
936-956
0.009
1
6mer
347-351
0.004
2
6mer
604-614
0.003
2
RP11-12A2.3
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454788
Biotype: lincRNA
Gene id: ENSG00000238099
Gene Name: RP11-12A2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-255
0.018
4
6mer
416-440
0.005
1
6mer
1065-1082
0.003
2
XLOC_011588
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023794
Biotype: transcript isomorph
Gene id: XLOC_011588
Gene Name: XLOC_011588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-134
0.026
0
SMG7-AS1
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432837
Biotype: lincRNA
Gene id: ENSG00000232860
Gene Name: SMG7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-45
0.021
2
6mer
72-89
0.005
1
RP11-541P9.3
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509211
Biotype: antisense
Gene id: ENSG00000250061
Gene Name: RP11-541P9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-504
0.026
5
RP11-384O8.1
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000587099
Biotype: lincRNA
Gene id: ENSG00000267034
Gene Name: RP11-384O8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-255
0.026
3
RP11-457M11.7
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616994
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2903-2920
0.017
1
6mer
122-126
0.005
0
6mer
1955-1967
0.002
1
6mer
1485-1512
0.001
0
CTB-89H12.4
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1827-1842
0.014
9
7mer
7372-7386
0.005
0
7mer
6280-6305
0.003
0
6mer
5353-5373
0.002
6
6mer
4152-4162
0.001
0
6mer
7365-7386
0.001
1
RP11-395P17.3
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033374.1
Biotype: lincRNA
Gene id: NR_033374.1 (gene)
Gene Name: RP11-395P17.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1965-1980
0.011
0
7mer
3631-3643
0.007
1
7mer
3266-3283
0.006
1
6mer
1582-1592
0.002
2
6mer
2237-2258
0.001
1
XLOC_000947
hsa-miR-4677-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001617
Biotype: transcript isomorph
Gene id: XLOC_000947
Gene Name: XLOC_000947
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-514
0.026
1
RP11-73M7.6
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593188
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-110
0.023
2
6mer
453-472
0.002
Not Conserved
U91328.19
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606723
Biotype: lincRNA
Gene id: ENSG00000272462
Gene Name: U91328.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
77-103
0.021
2
6mer
132-147
0.005
1
SVIL-AS1
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608994
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-122
0.026
1
MIR4435-1HG
hsa-miR-4677-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443467
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-164
0.016
1
6mer
703-725
0.010
5
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