LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-4677-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AP001465.5
hsa-miR-4677-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427446
Biotype: lincRNA
Gene id: ENSG00000228159
Gene Name: AP001465.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-181
0.026
1
RP11-556O15.1
hsa-miR-4677-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423568
Biotype: lincRNA
Gene id: ENSG00000203498
Gene Name: RP11-556O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-465
0.026
2
RP11-177H13.2
hsa-miR-4677-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517420
Biotype: retained_intron
Gene id: ENSG00000253837
Gene Name: RP11-177H13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1320-1346
0.020
7
6mer
521-538
0.003
Not Conserved
6mer
1169-1183
0.003
1
CTD-2303H24.2
hsa-miR-4677-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609193
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-28
0.024
0
6mer
329-339
0.002
Not Conserved
AC011995.1
hsa-miR-4677-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452701
Biotype: lincRNA
Gene id: ENSG00000237720
Gene Name: AC011995.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
489-506
0.015
1
8mer
182-191
0.011
1
XLOC_001621
hsa-miR-4677-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003817
Biotype: transcript isomorph
Gene id: XLOC_001621
Gene Name: XLOC_001621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1553-1561
0.012
1
6mer
1089-1114
0.010
1
6mer
763-767
0.003
0
HYMAI
hsa-miR-4677-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_002768.1
Biotype: sense
Gene id: NR_002768.1 (gene)
Gene Name: HYMAI
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1349-1361
0.012
1
7mer
4480-4498
0.007
1
7mer
2196-2213
0.006
1
6mer
3219-3236
0.002
1
GAS6-AS1
hsa-miR-4677-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458001
Biotype: antisense
Gene id: ENSG00000233695
Gene Name: GAS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
151-174
0.007
8
7mer
195-219
0.005
5
7mer
6313-6321
0.004
1
6mer
6890-6898
0.003
1
7mer
3589-3610
0.003
0
7mer
2818-2835
0.001
0
7mer
2851-2858
0.001
0
6mer
1602-1614
0.001
Not Conserved
6mer
2678-2701
0.001
1
AC005330.2
hsa-miR-4677-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590086
Biotype: lincRNA
Gene id: ENSG00000267372
Gene Name: AC005330.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-483
0.026
1
RP11-111F5.4
hsa-miR-4677-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1291-1303
0.018
0
6mer
1970-1985
0.008
0
RP11-134K13.4
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606298
Biotype: lincRNA
Gene id: ENSG00000271967
Gene Name: RP11-134K13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-36
0.026
4
RP11-328N19.1
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512678
Biotype: lincRNA
Gene id: ENSG00000251350
Gene Name: RP11-328N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-310
0.013
1
6mer
552-567
0.005
1
6mer
2338-2363
0.004
1
6mer
2130-2142
0.004
2
RP11-380J14.1
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412427
Biotype: lincRNA
Gene id: ENSG00000204362
Gene Name: RP11-380J14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4569-4595
0.013
2
8mer
4115-4141
0.008
1
6mer
165-184
0.004
1
6mer
4032-4050
0.002
0
RP11-524D16__A.3
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568809
Biotype: antisense
Gene id: ENSG00000261295
Gene Name: RP11-524D16__A.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-433
0.026
3
XLOC_009445
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019641
Biotype: transcript isomorph
Gene id: XLOC_009445
Gene Name: XLOC_009445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5679-5700
0.007
0
8mer
1790-1807
0.005
0
7mer
2648-2667
0.004
0
7mer
1880-1894
0.004
0
7mer
4665-4690
0.003
1
6mer
4691-4717
0.002
1
XLOC_001532
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003733
Biotype: transcript isomorph
Gene id: XLOC_001532
Gene Name: XLOC_001532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1552-1574
0.017
1
7mer
2499-2513
0.009
1
XLOC_004188
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008670
Biotype: transcript isomorph
Gene id: XLOC_004188
Gene Name: XLOC_004188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-661
0.026
6
LINC01532
hsa-miR-4677-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591143
Biotype: lincRNA
Gene id: ENSG00000267014
Gene Name: LINC01532
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-611
0.018
0
7mer
1436-1452
0.004
1
6mer
1153-1167
0.002
1
6mer
967-983
0.002
0
RP11-69H14.6
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558312
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.015
1
7mer
360-378
0.008
0
7mer
713-732
0.004
3
RP11-661D19.3
hsa-miR-4677-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000559402
Biotype: lincRNA
Gene id: ENSG00000259508
Gene Name: RP11-661D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-499
0.026
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept