LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
AC005154.6
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-244
0.010
1
7mer
1385-1404
0.005
0
6mer
13944-13967
0.002
0
6mer
2776-2781
0.002
2
6mer
7015-7034
0.002
0
6mer
5655-5664
0.002
1
6mer
12373-12398
0.001
1
6mer
13197-13204
0.001
1
6mer
5851-5866
0.001
0
6mer
1692-1711
0.001
1
XLOC_005816
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012263
Biotype: transcript isomorph
Gene id: XLOC_005816
Gene Name: XLOC_005816
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-124
0.027
1
RP11-69H14.6
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557817
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-155
0.017
1
7mer
513-531
0.009
0
RP11-73M7.6
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608246
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-145
0.024
2
6mer
488-507
0.002
Not Conserved
RP1-267D11.6
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611079
Biotype: antisense
Gene id: ENSG00000277283
Gene Name: RP1-267D11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1874-1880
0.022
2
7mer
1152-1171
0.004
0
RP5-857K21.1
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
396-406
0.016
0
6mer
161-173
0.011
0
XLOC_010828
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022502
Biotype: transcript isomorph
Gene id: XLOC_010828
Gene Name: XLOC_010828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-87
0.014
1
7mer
582-588
0.009
Not Conserved
6mer
797-823
0.002
1
6mer
938-954
0.002
0
AP001062.7
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000448927
Biotype: antisense
Gene id: ENSG00000184441
Gene Name: AP001062.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
776-780
0.007
6
8mer
1491-1510
0.007
1
6mer
4159-4178
0.003
0
6mer
3148-3164
0.002
1
6mer
3557-3584
0.002
0
6mer
3435-3455
0.002
0
6mer
2050-2076
0.001
1
6mer
1387-1394
0.001
1
6mer
1617-1642
0.001
1
7mer
1718-1739
0.001
2
6mer
1656-1678
0.001
1
RP11-65J3.14
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565882
Biotype: lincRNA
Gene id: ENSG00000261334
Gene Name: RP11-65J3.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-183
0.026
0
RP11-3B12.2
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110188.1
Biotype: lincRNA
Gene id: NR_110188.1 (gene)
Gene Name: RP11-3B12.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-94
0.016
1
6mer
145-150
0.004
1
6mer
596-610
0.004
1
6mer
640-644
0.002
1
RP11-21M24.3
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566764
Biotype: antisense
Gene id: ENSG00000260635
Gene Name: RP11-21M24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-353
0.026
0
PROX1-AS1
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607258
Biotype: antisense
Gene id: ENSG00000272167
Gene Name: PROX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1833-1859
0.026
10
STK24-AS1
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434547
Biotype: antisense
Gene id: ENSG00000224418
Gene Name: STK24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1149-1157
0.026
0
XLOC_009887
hsa-miR-4677-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020568
Biotype: transcript isomorph
Gene id: XLOC_009887
Gene Name: XLOC_009887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-291
0.026
0
RP11-624L4.2
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558846
Biotype: lincRNA
Gene id: ENSG00000259269
Gene Name: RP11-624L4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-259
0.017
1
6mer
532-549
0.010
6
XLOC_011075
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022797
Biotype: transcript isomorph
Gene id: XLOC_011075
Gene Name: XLOC_011075
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
885-904
0.026
1
XLOC_009537
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020124
Biotype: transcript isomorph
Gene id: XLOC_009537
Gene Name: XLOC_009537
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-674
0.026
1
LINC00870
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473713
Biotype: lincRNA
Gene id: ENSG00000243083
Gene Name: LINC00870
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2595-2609
0.016
1
6mer
192-206
0.005
3
6mer
370-394
0.003
1
6mer
1194-1219
0.002
0
XLOC_006771
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014672
Biotype: transcript isomorph
Gene id: XLOC_006771
Gene Name: XLOC_006771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-685
0.026
0
RP11-496I2.2
hsa-miR-4677-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551932
Biotype: lincRNA
Gene id: ENSG00000257310
Gene Name: RP11-496I2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
610-615
0.014
0
8mer
1839-1849
0.011
0
6mer
1839-1860
0.001
1
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