LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011176
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023866
Biotype: transcript isomorph
Gene id: XLOC_011176
Gene Name: XLOC_011176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1024-1045
0.027
0
RP3-355L5.4
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452363
Biotype: antisense
Gene id: ENSG00000231628
Gene Name: RP3-355L5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-483
0.018
0
7mer
448-468
0.006
0
6mer
274-289
0.003
1
XLOC_008986
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018637
Biotype: transcript isomorph
Gene id: XLOC_008986
Gene Name: XLOC_008986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-330
0.021
Not Conserved
6mer
1420-1443
0.004
1
6mer
679-683
0.002
Not Conserved
DKFZp434L192
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15-29
0.016
1
6mer
326-333
0.010
1
TUG1
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4406-4416
0.019
5
6mer
5541-5552
0.006
1
6mer
4312-4335
0.002
3
LINC01426
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420877
Biotype: antisense
Gene id: ENSG00000234380
Gene Name: LINC01426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
441-456
0.021
1
6mer
345-370
0.003
1
6mer
1838-1847
0.003
0
XLOC_013697
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028348
Biotype: transcript isomorph
Gene id: XLOC_013697
Gene Name: XLOC_013697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2984-3010
0.015
1
7mer
2428-2446
0.005
1
6mer
917-936
0.002
0
6mer
803-822
0.002
0
6mer
895-918
0.001
1
6mer
1776-1796
0.001
1
RP11-680F8.4
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560740
Biotype: sense_intronic
Gene id: ENSG00000259644
Gene Name: RP11-680F8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-399
0.027
1
PWRN2
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4824-4847
0.024
0
6mer
872-897
0.001
Not Conserved
6mer
2868-2892
0.001
Not Conserved
RP11-159M11.2
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453128
Biotype: antisense
Gene id: ENSG00000237993
Gene Name: RP11-159M11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-352
0.027
1
AC011899.9
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438047
Biotype: antisense
Gene id: ENSG00000233038
Gene Name: AC011899.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-238
0.008
1
6mer
3640-3645
0.003
1
6mer
3848-3862
0.002
0
6mer
981-985
0.002
2
7mer
3142-3150
0.002
0
7mer
1115-1135
0.002
1
6mer
1656-1677
0.002
1
6mer
3940-3960
0.002
0
6mer
1070-1090
0.002
0
6mer
1984-2001
0.001
1
RP11-131K5.2
hsa-miR-4677-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
722-731
0.009
1
6mer
917-933
0.008
1
6mer
1076-1094
0.007
1
6mer
745-750
0.002
0
RP11-104N10.1
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565310
Biotype: antisense
Gene id: ENSG00000261118
Gene Name: RP11-104N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-263
0.027
1
NPHP3-AS1
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504440
Biotype: antisense
Gene id: ENSG00000248724
Gene Name: NPHP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
940-966
0.018
0
7mer
2147-2169
0.009
2
XLOC_010296
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021712
Biotype: transcript isomorph
Gene id: XLOC_010296
Gene Name: XLOC_010296
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-259
0.027
1
XLOC_011134
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022880
Biotype: transcript isomorph
Gene id: XLOC_011134
Gene Name: XLOC_011134
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1629-1650
0.007
0
6mer
1460-1472
0.005
2
7mer
1686-1708
0.005
1
7mer
1419-1443
0.005
1
6mer
349-369
0.004
1
SLC25A25-AS1
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418747
Biotype: antisense
Gene id: ENSG00000234771
Gene Name: SLC25A25-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4555-4570
0.008
0
7mer
6221-6233
0.006
1
7mer
5856-5873
0.005
1
6mer
374-379
0.004
1
6mer
4172-4182
0.002
2
6mer
4827-4848
0.001
1
6mer
2522-2542
0.001
0
TSNAX-DISC1
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028393.1
Biotype: sense
Gene id: NR_028393.1 (gene)
Gene Name: TSNAX-DISC1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-553
0.011
0
7mer
7269-7274
0.007
3
8mer
1321-1331
0.004
1
6mer
6935-6947
0.003
3
6mer
5123-5135
0.002
0
RP11-211G23.1
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000562341
Biotype: lincRNA
Gene id: ENSG00000259854
Gene Name: RP11-211G23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-123
0.020
1
6mer
678-700
0.005
3
6mer
1181-1186
0.002
0
RP11-73M7.6
hsa-miR-4677-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591929
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-79
0.024
2
6mer
650-669
0.002
Not Conserved
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