LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC00364
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000415120
Biotype: lincRNA
Gene id: ENSG00000230040
Gene Name: LINC00364
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-76
0.027
4
XLOC_006763
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014664
Biotype: transcript isomorph
Gene id: XLOC_006763
Gene Name: XLOC_006763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-41
0.014
0
7mer
410-430
0.013
0
AC006019.4
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451116
Biotype: antisense
Gene id: ENSG00000233363
Gene Name: AC006019.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2186-2202
0.016
1
6mer
2737-2755
0.003
1
6mer
2361-2377
0.003
1
6mer
2492-2504
0.003
1
6mer
1486-1490
0.002
3
NHS-AS1
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452788
Biotype: antisense
Gene id: ENSG00000230020
Gene Name: NHS-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-306
0.019
Not Conserved
6mer
170-190
0.008
4
LINC01088
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515597
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-264
0.021
4
6mer
148-170
0.005
1
RP11-679B17.2
hsa-miR-4677-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607169
Biotype: lincRNA
Gene id: ENSG00000271897
Gene Name: RP11-679B17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-212
0.027
4
NUTM2A-AS1
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000420424
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-137
0.019
1
6mer
59-79
0.005
1
6mer
864-873
0.002
0
LA16c-306A4.1
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569106
Biotype: antisense
Gene id: ENSG00000260022
Gene Name: LA16c-306A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-403
0.027
0
TTN-AS1
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000578746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-423
0.021
3
6mer
631-650
0.006
7
KB-1507C5.4
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517983
Biotype: lincRNA
Gene id: ENSG00000254281
Gene Name: KB-1507C5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-478
0.027
3
RP5-1021I20.2
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555539
Biotype: lincRNA
Gene id: ENSG00000258586
Gene Name: RP5-1021I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
890-912
0.022
3
6mer
531-550
0.005
1
RP11-475A13.2
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1874-1878
0.010
1
6mer
1542-1565
0.007
1
6mer
995-1010
0.007
1
6mer
1093-1119
0.002
0
XLOC_007930
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017140
Biotype: transcript isomorph
Gene id: XLOC_007930
Gene Name: XLOC_007930
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1208-1214
0.027
1
XLOC_003250
hsa-miR-4677-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006657
Biotype: transcript isomorph
Gene id: XLOC_003250
Gene Name: XLOC_003250
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
895-901
0.020
0
6mer
260-275
0.006
2
AC073254.1
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600482
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-85
0.023
0
6mer
499-504
0.004
0
AC007193.9
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599645
Biotype: antisense
Gene id: ENSG00000268810
Gene Name: AC007193.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-156
0.027
1
XLOC_007796
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016430
Biotype: transcript isomorph
Gene id: XLOC_007796
Gene Name: XLOC_007796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2224-2248
0.014
1
7mer
1390-1396
0.006
0
6mer
138-162
0.005
1
6mer
2604-2629
0.002
0
XLOC_006645
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014006
Biotype: transcript isomorph
Gene id: XLOC_006645
Gene Name: XLOC_006645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2281-2289
0.016
1
6mer
88-107
0.004
0
6mer
2470-2482
0.003
1
6mer
1072-1076
0.002
0
6mer
1919-1923
0.002
1
NPHP3-AS1
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_002811.1
Biotype: antisense
Gene id: NR_002811.1 (gene)
Gene Name: NPHP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
940-966
0.017
0
7mer
2147-2169
0.009
2
RP11-206L10.9
hsa-miR-4677-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000589899
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-214
0.023
Not Conserved
6mer
666-670
0.004
Not Conserved
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