LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-366L20.2
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000356215
Biotype: antisense
Gene id: ENSG00000197301
Gene Name: RP11-366L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2034-2043
0.018
7
6mer
896-900
0.003
2
6mer
336-346
0.003
1
6mer
2542-2547
0.002
0
6mer
1955-1980
0.001
7
XLOC_005534
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012014
Biotype: transcript isomorph
Gene id: XLOC_005534
Gene Name: XLOC_005534
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
525-539
0.018
1
6mer
451-473
0.005
2
6mer
246-265
0.004
1
NR2F2-AS1
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558935
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-95
0.018
2
6mer
439-456
0.010
8
RP11-13N12.1
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519280
Biotype: lincRNA
Gene id: ENSG00000253496
Gene Name: RP11-13N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-219
0.027
0
CTD-2525I3.3
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599125
Biotype: antisense
Gene id: ENSG00000268015
Gene Name: CTD-2525I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-242
0.027
0
LINC01490
hsa-miR-4677-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551399
Biotype: lincRNA
Gene id: ENSG00000257741
Gene Name: LINC01490
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
673-699
0.027
1
RP11-728G15.1
hsa-miR-4677-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544339
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-23
0.027
2
XLOC_001200
hsa-miR-4677-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7162-7174
0.009
2
7mer
1658-1663
0.006
0
7mer
8392-8405
0.005
0
6mer
8999-9018
0.003
0
6mer
3281-3285
0.002
2
6mer
8372-8391
0.001
1
HOTAIR
hsa-miR-4677-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000453875
Biotype: antisense
Gene id: ENSG00000228630
Gene Name: HOTAIR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-63
0.027
2
RP11-3B12.2
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424515
Biotype: lincRNA
Gene id: ENSG00000237764
Gene Name: RP11-3B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-111
0.016
1
6mer
162-167
0.005
1
6mer
613-627
0.004
1
6mer
657-661
0.002
1
XLOC_006322
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012854
Biotype: transcript isomorph
Gene id: XLOC_006322
Gene Name: XLOC_006322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-502
0.011
1
6mer
5856-5867
0.003
1
6mer
814-831
0.003
1
7mer
4639-4662
0.003
1
6mer
288-300
0.003
0
6mer
868-893
0.002
1
6mer
3430-3457
0.001
1
XLOC_000056
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000841
Biotype: transcript isomorph
Gene id: XLOC_000056
Gene Name: XLOC_000056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-675
0.015
0
7mer
87-103
0.012
1
VIPR1-AS1
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601312
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-101
0.020
1
6mer
145-161
0.004
1
6mer
298-321
0.003
1
RAD21-AS1
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521487
Biotype: antisense
Gene id: ENSG00000253327
Gene Name: RAD21-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1324-1333
0.012
0
7mer
718-727
0.008
1
6mer
1950-1970
0.007
1
RP11-830F9.6
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378347
Biotype: antisense
Gene id: ENSG00000205018
Gene Name: RP11-830F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
241-254
0.004
1
6mer
1569-1588
0.002
0
6mer
1509-1521
0.002
0
6mer
569-581
0.002
0
6mer
1436-1454
0.002
0
6mer
1375-1387
0.002
0
6mer
1297-1320
0.001
0
6mer
1241-1253
0.001
0
6mer
636-648
0.001
0
6mer
1168-1186
0.001
0
6mer
703-715
0.001
0
6mer
1107-1119
0.001
0
6mer
770-782
0.001
0
6mer
1040-1052
0.001
0
6mer
973-985
0.001
0
6mer
838-850
0.001
0
6mer
906-918
0.001
0
XLOC_011694
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024370
Biotype: transcript isomorph
Gene id: XLOC_011694
Gene Name: XLOC_011694
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-199
0.025
0
6mer
338-348
0.002
Not Conserved
RP13-582O9.5
hsa-miR-4677-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517411
Biotype: antisense
Gene id: ENSG00000253716
Gene Name: RP13-582O9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-104
0.023
2
6mer
371-388
0.004
0
RP11-264B17.5
hsa-miR-4677-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561471
Biotype: antisense
Gene id: ENSG00000261552
Gene Name: RP11-264B17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
205-217
0.007
5
6mer
349-367
0.004
1
6mer
123-127
0.004
1
6mer
93-114
0.003
1
6mer
140-150
0.003
1
6mer
244-260
0.003
1
6mer
187-191
0.003
0
RP11-179B15.6
hsa-miR-4677-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562575
Biotype: lincRNA
Gene id: ENSG00000261076
Gene Name: RP11-179B15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-422
0.027
1
CTC-321K16.1
hsa-miR-4677-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514446
Biotype: antisense
Gene id: ENSG00000250167
Gene Name: CTC-321K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-550
0.027
1
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