LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
CTD-2303H24.2
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000608313
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-57
0.025
0
6mer
482-492
0.002
Not Conserved
RP11-647P12.1
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507782
Biotype: lincRNA
Gene id: ENSG00000250344
Gene Name: RP11-647P12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-407
0.021
2
6mer
462-475
0.007
4
RP11-672L10.1
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
773-786
0.012
7
7mer
49-67
0.010
1
7mer
548-573
0.005
1
MCHR2-AS1
hsa-miR-4677-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430122
Biotype: antisense
Gene id: ENSG00000229315
Gene Name: MCHR2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-313
0.027
2
XLOC_011549
hsa-miR-4677-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023757
Biotype: transcript isomorph
Gene id: XLOC_011549
Gene Name: XLOC_011549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-359
0.027
2
RP11-319G9.3
hsa-miR-4677-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568885
Biotype: sense_intronic
Gene id: ENSG00000260816
Gene Name: RP11-319G9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
658-682
0.016
3
7mer
455-460
0.008
1
7mer
1365-1392
0.003
0
RP11-403I13.8
hsa-miR-4677-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621033
Biotype: retained_intron
Gene id: ENSG00000272419
Gene Name: RP11-403I13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
924-930
0.015
0
7mer
68-73
0.009
1
6mer
2067-2090
0.002
0
6mer
1566-1589
0.001
Not Conserved
XLOC_012012
hsa-miR-4677-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024731
Biotype: transcript isomorph
Gene id: XLOC_012012
Gene Name: XLOC_012012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
257-276
0.027
1
LINC01243
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562065
Biotype: lincRNA
Gene id: ENSG00000260720
Gene Name: LINC01243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
609-635
0.023
0
6mer
597-623
0.004
0
CACNA1C-AS1
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501371
Biotype: antisense
Gene id: ENSG00000246627
Gene Name: CACNA1C-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-65
0.020
2
8mer
1373-1379
0.008
1
XLOC_005547
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012021
Biotype: transcript isomorph
Gene id: XLOC_005547
Gene Name: XLOC_005547
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-580
0.016
2
7mer
993-1012
0.011
1
XLOC_010834
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022511
Biotype: transcript isomorph
Gene id: XLOC_010834
Gene Name: XLOC_010834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-306
0.014
1
7mer
449-473
0.014
1
RP11-142A23.1
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523602
Biotype: lincRNA
Gene id: ENSG00000253317
Gene Name: RP11-142A23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-136
0.027
1
GS1-124K5.11
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-163
0.018
1
7mer
4001-4009
0.002
0
6mer
5874-5898
0.002
0
6mer
3666-3681
0.002
0
6mer
5797-5804
0.001
1
RP11-286B14.1
hsa-miR-4677-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440116
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
724-745
0.014
3
8mer
135-159
0.013
1
RP11-787I22.3
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605885
Biotype: antisense
Gene id: ENSG00000271730
Gene Name: RP11-787I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-98
0.027
9
FENDRR
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000598996
Biotype: lincRNA
Gene id: ENSG00000268388
Gene Name: FENDRR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
88-114
0.006
0
7mer
1078-1093
0.006
0
7mer
2404-2410
0.006
0
6mer
2525-2529
0.004
1
6mer
353-369
0.002
0
6mer
2375-2387
0.002
0
XLOC_011143
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022889
Biotype: transcript isomorph
Gene id: XLOC_011143
Gene Name: XLOC_011143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-306
0.027
1
RP11-76E17.2
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553477
Biotype: lincRNA
Gene id: ENSG00000259123
Gene Name: RP11-76E17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-296
0.027
2
RP11-64D24.4
hsa-miR-4677-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534904
Biotype: antisense
Gene id: ENSG00000256195
Gene Name: RP11-64D24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3110-3122
0.014
1
7mer
3643-3662
0.010
1
6mer
2813-2834
0.003
0
6mer
1891-1895
0.001
0
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