LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC00951
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038887.1
Biotype: lincRNA
Gene id: NR_038887.1 (gene)
Gene Name: LINC00951
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2419-2425
0.006
Not Conserved
6mer
535-539
0.005
2
6mer
2990-2997
0.004
1
6mer
121-146
0.004
1
6mer
2569-2595
0.003
0
6mer
502-516
0.002
1
6mer
1819-1837
0.002
1
6mer
2494-2498
0.002
Not Conserved
RP3-468B3.2
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-566
0.015
1
6mer
7-32
0.002
0
7mer
4883-4899
0.002
0
6mer
1610-1631
0.002
1
6mer
3281-3291
0.002
8
6mer
5446-5465
0.002
0
6mer
3247-3272
0.002
1
6mer
3985-4005
0.001
1
6mer
4945-4963
0.001
0
HLX-AS1
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000552026
Biotype: antisense
Gene id: ENSG00000257551
Gene Name: HLX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-144
0.028
2
LOC730101
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_024403.1
Biotype: lincRNA
Gene id: NR_024403.1 (gene)
Gene Name: LOC730101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3580-3589
0.019
4
7mer
2966-2983
0.007
1
6mer
1749-1762
0.002
0
RP11-32D16.1
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522704
Biotype: lincRNA
Gene id: ENSG00000254135
Gene Name: RP11-32D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-434
0.016
6
6mer
248-270
0.006
3
6mer
652-663
0.005
1
RP11-586D19.2
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507424
Biotype: lincRNA
Gene id: ENSG00000251408
Gene Name: RP11-586D19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3152-3158
0.009
0
7mer
3111-3119
0.007
1
7mer
2608-2633
0.005
1
6mer
3451-3465
0.003
1
6mer
1861-1865
0.002
2
6mer
2203-2207
0.002
1
AC004158.2
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570152
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-98
0.028
1
XLOC_004539
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010082
Biotype: transcript isomorph
Gene id: XLOC_004539
Gene Name: XLOC_004539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1954-1966
0.019
2
6mer
1894-1898
0.008
4
RP11-191L9.4
hsa-miR-4677-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426452
Biotype: retained_intron
Gene id: ENSG00000224271
Gene Name: RP11-191L9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-59
0.028
1
XLOC_010651
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-206
0.028
1
XLOC_008652
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017720
Biotype: transcript isomorph
Gene id: XLOC_008652
Gene Name: XLOC_008652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3427-3450
0.010
3
8mer
1262-1268
0.009
1
6mer
3738-3748
0.005
1
6mer
535-553
0.004
1
RP11-488C13.5
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556072
Biotype: lincRNA
Gene id: ENSG00000258301
Gene Name: RP11-488C13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-202
0.012
2
8mer
774-795
0.009
0
7mer
106-111
0.007
1
SNHG1
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000538654
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2489-2503
0.019
6
6mer
573-589
0.004
1
6mer
379-397
0.003
1
6mer
1337-1361
0.001
0
XLOC_013162
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027115
Biotype: transcript isomorph
Gene id: XLOC_013162
Gene Name: XLOC_013162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-749
0.028
0
LINC00550
hsa-miR-4677-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-209
0.028
1
LINC01429
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000438154
Biotype: lincRNA
Gene id: ENSG00000227964
Gene Name: LINC01429
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-634
0.013
2
7mer
1886-1901
0.005
1
6mer
1986-2006
0.003
2
6mer
1900-1919
0.003
1
6mer
1945-1953
0.002
1
6mer
584-595
0.002
3
WI2-85898F10.2
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623717
Biotype: antisense
Gene id: ENSG00000279954
Gene Name: WI2-85898F10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2678-2693
0.013
1
7mer
3251-3271
0.005
1
6mer
2185-2204
0.003
1
6mer
557-570
0.002
0
6mer
1009-1028
0.002
0
6mer
1175-1190
0.001
0
6mer
1565-1588
0.001
0
6mer
1047-1056
0.001
0
AC009518.4
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415393
Biotype: lincRNA
Gene id: ENSG00000224865
Gene Name: AC009518.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-873
0.012
1
7mer
478-492
0.006
1
7mer
1029-1052
0.005
0
6mer
737-755
0.004
2
SNHG1
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000537925
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1226-1240
0.020
6
6mer
574-590
0.004
1
6mer
380-398
0.003
1
LINC00689
hsa-miR-4677-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438049
Biotype: antisense
Gene id: ENSG00000231419
Gene Name: LINC00689
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-129
0.014
1
6mer
441-458
0.004
1
6mer
3737-3748
0.003
1
6mer
495-520
0.003
1
6mer
2211-2238
0.002
1
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