LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
FAM157A
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000431569
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-606
0.026
0
6mer
614-637
0.002
0
XLOC_010017
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1779-1805
0.014
1
6mer
1900-1912
0.006
3
6mer
272-295
0.004
1
6mer
1653-1669
0.004
0
CTC-297N7.9
hsa-miR-4677-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579529
Biotype: lincRNA
Gene id: ENSG00000264016
Gene Name: CTC-297N7.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-519
0.028
1
RP1-296L11.1
hsa-miR-4677-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528872
Biotype: antisense
Gene id: ENSG00000255525
Gene Name: RP1-296L11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-542
0.025
0
6mer
472-477
0.003
0
RP11-66A2.1
hsa-miR-4677-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430921
Biotype: lincRNA
Gene id: ENSG00000225919
Gene Name: RP11-66A2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.028
2
XLOC_013658
hsa-miR-4677-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028621
Biotype: transcript isomorph
Gene id: XLOC_013658
Gene Name: XLOC_013658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
489-510
0.014
1
7mer
1074-1081
0.010
0
6mer
744-762
0.004
2
RP11-379J5.5
hsa-miR-4677-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109955.1
Biotype: antisense
Gene id: NR_109955.1 (gene)
Gene Name: RP11-379J5.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-149
0.008
3
6mer
592-614
0.008
6
6mer
1396-1422
0.004
1
6mer
473-477
0.004
1
6mer
1635-1639
0.004
1
RP5-952N6.1
hsa-miR-4677-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419450
Biotype: lincRNA
Gene id: ENSG00000229051
Gene Name: RP5-952N6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-633
0.023
1
6mer
1789-1804
0.005
1
RP11-244O19.1
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000567068
Biotype: sense_overlapping
Gene id: ENSG00000261534
Gene Name: RP11-244O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2498-2505
0.009
0
7mer
1809-1836
0.005
1
6mer
3708-3714
0.004
1
6mer
644-658
0.002
1
6mer
3251-3270
0.002
1
6mer
2695-2714
0.002
0
6mer
2246-2251
0.002
1
6mer
2811-2830
0.001
1
XLOC_001351
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003577
Biotype: transcript isomorph
Gene id: XLOC_001351
Gene Name: XLOC_001351
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-217
0.028
1
RP11-181G12.2
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000333854
Biotype: antisense
Gene id: ENSG00000182873
Gene Name: RP11-181G12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1186-1205
0.026
1
6mer
765-784
0.002
0
RP13-582O9.5
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523031
Biotype: antisense
Gene id: ENSG00000253716
Gene Name: RP13-582O9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-109
0.028
2
NFIA-AS2
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438559
Biotype: antisense
Gene id: ENSG00000237928
Gene Name: NFIA-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1108
0.016
2
7mer
858-874
0.008
1
6mer
211-232
0.004
2
RP11-335O13.8
hsa-miR-4677-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434265
Biotype: antisense
Gene id: ENSG00000224671
Gene Name: RP11-335O13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-70
0.028
3
RP11-72I8.1
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569858
Biotype: antisense
Gene id: ENSG00000260735
Gene Name: RP11-72I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
272-289
0.015
0
7mer
1883-1888
0.008
0
7mer
1562-1575
0.005
0
XLOC_005208
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-66
0.024
2
6mer
95-110
0.004
1
SEPT7-AS1
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437235
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1178-1189
0.024
2
6mer
2942-2967
0.004
6
RP11-379C10.4
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453870
Biotype: antisense
Gene id: ENSG00000230536
Gene Name: RP11-379C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-59
0.011
2
6mer
372-377
0.007
7
6mer
11-23
0.006
3
6mer
104-126
0.004
1
RP11-363J20.1
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556182
Biotype: lincRNA
Gene id: ENSG00000258957
Gene Name: RP11-363J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-271
0.021
4
6mer
234-256
0.005
1
6mer
195-221
0.002
Not Conserved
RP11-229P13.25
hsa-miR-4677-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569497
Biotype: sense_overlapping
Gene id: ENSG00000260190
Gene Name: RP11-229P13.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-783
0.013
0
7mer
422-446
0.010
0
6mer
292-310
0.005
0
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