LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
AC009480.3
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000402410
Biotype: antisense
Gene id: ENSG00000223911
Gene Name: AC009480.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-117
0.028
10
RP11-8L8.2
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557121
Biotype: lincRNA
Gene id: ENSG00000259004
Gene Name: RP11-8L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
590-604
0.025
1
6mer
95-114
0.003
0
XLOC_011102
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-656
0.009
2
7mer
2223-2238
0.009
1
6mer
86-102
0.005
2
6mer
2599-2625
0.003
2
6mer
631-644
0.002
2
CTC-297N7.9
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579367
Biotype: lincRNA
Gene id: ENSG00000264016
Gene Name: CTC-297N7.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-336
0.028
1
RP1-121G13.2
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411442
Biotype: antisense
Gene id: ENSG00000228082
Gene Name: RP1-121G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-124
0.028
3
MGC15885
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560347
Biotype: antisense
Gene id: ENSG00000259458
Gene Name: MGC15885
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-498
0.025
1
6mer
1297-1301
0.003
1
RP11-245J9.4
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462717
Biotype: antisense
Gene id: ENSG00000243410
Gene Name: RP11-245J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-28
0.028
2
RP11-513I15.6
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000586726
Biotype: antisense
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-210
0.009
0
7mer
763-771
0.009
5
6mer
2285-2306
0.005
1
6mer
2359-2363
0.003
2
6mer
249-253
0.003
1
AP001046.6
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435702
Biotype: lincRNA
Gene id: ENSG00000225637
Gene Name: AP001046.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-139
0.018
1
8mer
2082-2090
0.008
0
6mer
1331-1358
0.002
0
XLOC_000393
hsa-miR-4677-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000055
Biotype: transcript isomorph
Gene id: XLOC_000393
Gene Name: XLOC_000393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1205-1210
0.018
1
6mer
91-101
0.006
1
6mer
857-881
0.005
1
RP11-114G22.1
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590328
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-555
0.023
1
6mer
529-538
0.005
4
RP4-761J14.8
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-295
0.016
1
6mer
116-120
0.012
10
RP11-379J5.5
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428285
Biotype: antisense
Gene id: ENSG00000233993
Gene Name: RP11-379J5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-149
0.008
3
6mer
592-614
0.008
6
6mer
1396-1422
0.004
1
6mer
473-477
0.004
1
6mer
1635-1639
0.004
1
FAM138B
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432583
Biotype: lincRNA
Gene id: ENSG00000226516
Gene Name: FAM138B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-685
0.025
1
6mer
713-731
0.003
2
AC007255.8
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450540
Biotype: antisense
Gene id: ENSG00000223813
Gene Name: AC007255.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1107-1133
0.028
0
XLOC_001325
hsa-miR-4677-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003553
Biotype: transcript isomorph
Gene id: XLOC_001325
Gene Name: XLOC_001325
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-180
0.028
0
XLOC_002461
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005314
Biotype: transcript isomorph
Gene id: XLOC_002461
Gene Name: XLOC_002461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-440
0.021
1
6mer
757-778
0.004
0
6mer
539-554
0.003
0
XLOC_008826
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1526-1533
0.013
0
7mer
2457-2472
0.010
1
6mer
962-983
0.005
1
RP11-17G12.3
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545474
Biotype: antisense
Gene id: ENSG00000256746
Gene Name: RP11-17G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-316
0.022
1
6mer
190-216
0.006
5
XLOC_007978
hsa-miR-4677-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017167
Biotype: transcript isomorph
Gene id: XLOC_007978
Gene Name: XLOC_007978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-253
0.028
Not Conserved
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