LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-864J10.4
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546714
Biotype: antisense
Gene id: ENSG00000258136
Gene Name: RP11-864J10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-376
0.013
1
6mer
1134-1142
0.008
9
6mer
1392-1411
0.003
1
6mer
1467-1483
0.003
1
6mer
941-950
0.002
1
RP11-307P5.1
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442094
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-137
0.028
4
AC116614.1
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000456949
Biotype: antisense
Gene id: ENSG00000235688
Gene Name: AC116614.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-247
0.028
1
TMEM26-AS1
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000389640
Biotype: antisense
Gene id: ENSG00000237233
Gene Name: TMEM26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-39
0.015
0
7mer
684-700
0.014
1
RP5-894A10.2
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000467537
Biotype: antisense
Gene id: ENSG00000244701
Gene Name: RP5-894A10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-511
0.016
7
8mer
339-354
0.012
0
LINC-ROR
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000553704
Biotype: lincRNA
Gene id: ENSG00000258609
Gene Name: LINC-ROR
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2201-2220
0.009
Not Conserved
7mer
1140-1165
0.009
0
6mer
347-361
0.007
1
7mer
1018-1044
0.004
1
TMEM51-AS1
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2201-2218
0.006
0
7mer
750-768
0.006
2
6mer
3939-3962
0.004
9
7mer
3430-3438
0.003
1
6mer
6731-6749
0.003
1
6mer
1552-1565
0.002
1
6mer
6439-6455
0.001
0
6mer
820-838
0.001
0
6mer
801-810
0.001
2
LINC00094
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000432807
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1093-1109
0.014
7
7mer
157-173
0.011
1
6mer
1697-1712
0.003
1
XLOC_009526
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019734
Biotype: transcript isomorph
Gene id: XLOC_009526
Gene Name: XLOC_009526
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-301
0.012
1
7mer
180-196
0.008
1
6mer
864-883
0.005
0
6mer
195-212
0.004
2
RP11-75C23.1
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422250
Biotype: antisense
Gene id: ENSG00000230260
Gene Name: RP11-75C23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-280
0.017
8
7mer
239-246
0.011
2
CTC-444N24.8
hsa-miR-4677-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600047
Biotype: lincRNA
Gene id: ENSG00000268713
Gene Name: CTC-444N24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-420
0.012
3
7mer
1112-1125
0.010
0
6mer
1011-1022
0.006
3
RP11-21L23.2
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-152
0.013
1
7mer
2979-2995
0.007
3
7mer
2508-2523
0.003
1
6mer
2194-2204
0.002
1
7mer
2594-2609
0.002
2
6mer
2227-2237
0.001
5
AC007131.1
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409590
Biotype: lincRNA
Gene id: ENSG00000222030
Gene Name: AC007131.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-720
0.024
9
6mer
1769-1783
0.005
1
C16orf82
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000418886
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2128-2147
0.024
1
6mer
57-63
0.004
1
XLOC_001068
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000653
Biotype: transcript isomorph
Gene id: XLOC_001068
Gene Name: XLOC_001068
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-224
0.028
2
LINC01193
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553416
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1351
0.013
1
8mer
1386-1410
0.010
3
6mer
2389-2409
0.002
0
6mer
532-552
0.002
0
6mer
1857-1867
0.001
0
6mer
1870-1889
0.000
0
CTA-243E7.4
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623888
Biotype: antisense
Gene id: ENSG00000279085
Gene Name: CTA-243E7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-477
0.028
0
RP11-495P10.5
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427169
Biotype: lincRNA
Gene id: ENSG00000238107
Gene Name: RP11-495P10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1524-1530
0.028
0
RP11-350G8.9
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607963
Biotype: antisense
Gene id: ENSG00000273110
Gene Name: RP11-350G8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-612
0.020
4
7mer
296-303
0.009
1
AC091132.1
hsa-miR-4677-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433601
Biotype: antisense
Gene id: ENSG00000236234
Gene Name: AC091132.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-70
0.016
1
7mer
410-428
0.007
2
6mer
35-45
0.005
1
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