LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
COL18A1-AS1
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000485206
Biotype: antisense
Gene id: ENSG00000183535
Gene Name: COL18A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2058-2074
0.019
0
6mer
213-221
0.003
0
6mer
508-524
0.002
1
6mer
1292-1315
0.002
1
6mer
652-666
0.002
0
LINC-ROR
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_048536.1
Biotype: lincRNA
Gene id: NR_048536.1 (gene)
Gene Name: LINC-ROR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2189-2208
0.009
Not Conserved
7mer
1128-1153
0.009
0
6mer
335-349
0.007
1
7mer
1006-1032
0.004
1
RP11-1151B14.5
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000610389
Biotype: sense_intronic
Gene id: ENSG00000274354
Gene Name: RP11-1151B14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-223
0.029
0
AC012322.1
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561657
Biotype: lincRNA
Gene id: ENSG00000261028
Gene Name: AC012322.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
325-332
0.022
0
6mer
168-190
0.007
5
RP11-857B24.1
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554389
Biotype: antisense
Gene id: ENSG00000258633
Gene Name: RP11-857B24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
239-260
0.029
1
XLOC_001401
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1295-1304
0.019
0
6mer
1732-1750
0.009
0
XLOC_011130
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022413
Biotype: transcript isomorph
Gene id: XLOC_011130
Gene Name: XLOC_011130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1210-1217
0.018
2
6mer
1509-1534
0.005
7
7mer
692-697
0.005
2
6mer
553-573
0.002
0
RP11-35G9.3
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591854
Biotype: antisense
Gene id: ENSG00000267040
Gene Name: RP11-35G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-160
0.026
1
8mer+mismatch
661-681
0.003
0
CTD-3214H19.6
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601797
Biotype: antisense
Gene id: ENSG00000268204
Gene Name: CTD-3214H19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-763
0.022
2
6mer
337-353
0.004
2
6mer
226-238
0.003
0
RP11-307C19.3
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558887
Biotype: antisense
Gene id: ENSG00000259666
Gene Name: RP11-307C19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-493
0.013
Not Conserved
7mer
1035-1051
0.009
3
6mer
801-827
0.004
2
6mer
589-603
0.002
1
CTA-929C8.9
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24649-24667
0.014
1
7mer
1328-1347
0.004
0
7mer
4538-4553
0.002
1
6mer
22780-22799
0.002
0
6mer
21766-21780
0.002
1
6mer
6369-6384
0.001
0
6mer
19652-19674
0.001
Not Conserved
6mer
2632-2636
0.001
0
6mer
22061-22071
0.001
Not Conserved
6mer
19942-19967
0.001
Not Conserved
LINC00094
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430633
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1032-1048
0.015
7
7mer
213-229
0.011
1
6mer
1636-1651
0.003
1
RP11-74E22.8
hsa-miR-4677-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
866-884
0.010
0
6mer
68-88
0.007
4
8mer
1953-1979
0.006
1
6mer
1035-1051
0.002
0
6mer
481-504
0.002
0
6mer
1342-1368
0.002
4
6mer
1838-1855
0.001
2
XLOC_002926
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006316
Biotype: transcript isomorph
Gene id: XLOC_002926
Gene Name: XLOC_002926
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-961
0.029
2
XLOC_010841
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022517
Biotype: transcript isomorph
Gene id: XLOC_010841
Gene Name: XLOC_010841
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-453
0.029
4
RP11-461A8.4
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570409
Biotype: sense_overlapping
Gene id: ENSG00000263235
Gene Name: RP11-461A8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
673-700
0.016
2
8mer
376-386
0.013
0
AC226118.1
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000515213
Biotype: lincRNA
Gene id: ENSG00000249574
Gene Name: AC226118.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-29
0.010
0
6mer
1726-1751
0.005
0
6mer
1801-1805
0.004
0
6mer
1564-1575
0.003
0
6mer
1773-1784
0.003
0
6mer
891-908
0.003
0
CTA-280A3.2
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-161
0.010
0
6mer
8957-8983
0.003
1
6mer
584-603
0.003
2
7mer
7468-7486
0.003
0
7mer
2993-3006
0.002
2
6mer
2924-2928
0.002
2
6mer
5114-5124
0.001
1
6mer
7706-7720
0.001
1
6mer
1868-1886
0.001
1
6mer
7991-7995
0.001
0
6mer
6771-6786
0.001
Not Conserved
XLOC_010238
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020225
Biotype: transcript isomorph
Gene id: XLOC_010238
Gene Name: XLOC_010238
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3221-3241
0.017
1
7mer
701-721
0.006
0
6mer
3087-3110
0.005
1
AC004221.2
hsa-miR-4677-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592843
Biotype: lincRNA
Gene id: ENSG00000267778
Gene Name: AC004221.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-171
0.015
1
7mer
113-118
0.009
1
6mer
515-520
0.004
1
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