LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
SNX29P2
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604430
Biotype: lincRNA
Gene id: ENSG00000198106
Gene Name: SNX29P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4258-4277
0.010
0
7mer
1017-1029
0.007
1
6mer
4626-4645
0.005
0
6mer
175-196
0.002
1
6mer
1764-1784
0.002
5
6mer
428-437
0.002
0
6mer
3515-3532
0.001
0
XLOC_000490
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001218
Biotype: transcript isomorph
Gene id: XLOC_000490
Gene Name: XLOC_000490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-117
0.029
0
RP11-94L15.2
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
599-625
0.018
7
7mer
279-303
0.006
2
6mer
793-801
0.002
0
6mer
3533-3547
0.002
3
XLOC_003675
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008214
Biotype: transcript isomorph
Gene id: XLOC_003675
Gene Name: XLOC_003675
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-54
0.029
0
AC007255.8
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447171
Biotype: antisense
Gene id: ENSG00000223813
Gene Name: AC007255.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-653
0.029
0
XLOC_003281
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006680
Biotype: transcript isomorph
Gene id: XLOC_003281
Gene Name: XLOC_003281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
906-917
0.018
0
6mer
70-87
0.006
1
6mer
179-205
0.005
2
RP11-752L20.5
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509370
Biotype: lincRNA
Gene id: ENSG00000251688
Gene Name: RP11-752L20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-169
0.026
5
6mer
610-629
0.003
0
CTD-2303H24.2
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000608385
Biotype: retained_intron
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-57
0.026
0
6mer
291-301
0.003
Not Conserved
XLOC_002872
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006268
Biotype: transcript isomorph
Gene id: XLOC_002872
Gene Name: XLOC_002872
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
621-635
0.016
5
7mer
440-461
0.010
1
6mer
1123-1137
0.003
4
LINC00589
hsa-miR-4677-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518623
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
860-865
0.029
4
CTD-2303H24.2
hsa-miR-4677-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000609805
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-57
0.029
0
LINC00298
hsa-miR-4677-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426969
Biotype: lincRNA
Gene id: ENSG00000235665
Gene Name: LINC00298
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-464
0.016
Not Conserved
7mer
1792-1814
0.010
1
6mer
1673-1690
0.003
2
AP000857.3
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532123
Biotype: antisense
Gene id: ENSG00000255555
Gene Name: AP000857.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-376
0.029
2
RP11-953B20.1
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562989
Biotype: lincRNA
Gene id: ENSG00000261710
Gene Name: RP11-953B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
752-773
0.012
1
7mer
667-684
0.006
0
6mer
528-548
0.006
1
6mer
236-254
0.003
0
6mer
821-834
0.002
0
CTD-2015G9.2
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569740
Biotype: lincRNA
Gene id: ENSG00000261175
Gene Name: CTD-2015G9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2885-2899
0.023
Not Conserved
7mer
2955-2960
0.004
Not Conserved
6mer
2515-2524
0.001
Not Conserved
LOC100506548
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037665.1
Biotype: sense
Gene id: NR_037665.1 (gene)
Gene Name: LOC100506548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2235-2241
0.026
2
6mer
309-328
0.003
2
AC005013.5
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436594
Biotype: lincRNA
Gene id: ENSG00000228421
Gene Name: AC005013.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-562
0.017
3
7mer
409-435
0.011
0
RP11-189E14.4
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561523
Biotype: lincRNA
Gene id: ENSG00000261623
Gene Name: RP11-189E14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3216-3233
0.007
Not Conserved
7mer
3059-3079
0.005
0
7mer
1313-1323
0.005
2
6mer
653-677
0.004
2
6mer
3159-3176
0.003
2
6mer
2879-2900
0.002
1
6mer
2706-2720
0.002
1
RP11-298C2.1
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000620572
Biotype: sense_intronic
Gene id: ENSG00000277539
Gene Name: RP11-298C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-233
0.015
1
7mer
356-361
0.014
1
RP3-341O5.3
hsa-miR-4677-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623956
Biotype: lincRNA
Gene id: ENSG00000280246
Gene Name: RP3-341O5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3979-3985
0.023
0
6mer
673-689
0.006
2
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