LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
AC011286.1
hsa-miR-4677-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455068
Biotype: lincRNA
Gene id: ENSG00000232328
Gene Name: AC011286.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-436
0.016
0
7mer
494-503
0.013
0
LIMD1-AS1
hsa-miR-4677-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427644
Biotype: antisense
Gene id: ENSG00000230530
Gene Name: LIMD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-139
0.026
4
6mer
892-917
0.004
2
RP11-800A3.4
hsa-miR-4677-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000565433
Biotype: sense_overlapping
Gene id: ENSG00000260401
Gene Name: RP11-800A3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3035-3052
0.012
1
8mer
170-190
0.011
1
7mer
94-106
0.005
1
6mer
878-901
0.001
Not Conserved
RP4-668E10.4
hsa-miR-4677-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000613936
Biotype: lincRNA
Gene id: ENSG00000278254
Gene Name: RP4-668E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-518
0.029
1
CTD-2303H24.2
hsa-miR-4677-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000608726
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-57
0.029
0
XLOC_001544
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004830
Biotype: transcript isomorph
Gene id: XLOC_001544
Gene Name: XLOC_001544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-284
0.029
2
LUCAT1
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513626
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1779-1806
0.010
2
8mer
940-959
0.010
1
6mer
787-813
0.005
6
7mer
888-911
0.004
0
RP11-67M9.1
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520075
Biotype: lincRNA
Gene id: ENSG00000254171
Gene Name: RP11-67M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
417-444
0.022
6
6mer
375-387
0.007
4
SVIL-AS1
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-147
0.021
1
6mer
529-547
0.008
1
XLOC_000679
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001378
Biotype: transcript isomorph
Gene id: XLOC_000679
Gene Name: XLOC_000679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
748-769
0.012
1
6mer
646-664
0.011
1
6mer
176-189
0.005
0
HAND2-AS1
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
848-871
0.023
10
6mer
277-296
0.004
1
6mer
1657-1670
0.002
2
SLC39A12-AS1
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445287
Biotype: antisense
Gene id: ENSG00000226083
Gene Name: SLC39A12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-806
0.029
1
RP11-348N5.7
hsa-miR-4677-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000603915
Biotype: antisense
Gene id: ENSG00000270589
Gene Name: RP11-348N5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-219
0.012
1
7mer
78-103
0.009
0
6mer
148-165
0.005
2
6mer
1493-1513
0.003
0
XLOC_004198
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008682
Biotype: transcript isomorph
Gene id: XLOC_004198
Gene Name: XLOC_004198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-128
0.018
0
7mer
708-724
0.011
1
XLOC_014334
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029886
Biotype: transcript isomorph
Gene id: XLOC_014334
Gene Name: XLOC_014334
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
341-346
0.004
1
6mer
99-104
0.004
0
6mer
120-125
0.004
0
6mer
381-395
0.004
0
6mer
178-183
0.004
0
6mer
18-23
0.003
Not Conserved
6mer
217-222
0.003
0
6mer
280-285
0.003
0
RP11-1070N10.3
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554161
Biotype: lincRNA
Gene id: ENSG00000258572
Gene Name: RP11-1070N10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-178
0.025
4
6mer
792-818
0.004
0
RP11-809F4.3
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1386-1411
0.019
0
7mer
1252-1269
0.010
0
PRICKLE2-AS1
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1575-1597
0.019
3
7mer
1506-1519
0.006
7
6mer
2135-2160
0.002
2
6mer
5645-5667
0.001
Not Conserved
6mer
3309-3325
0.001
2
RP11-91I20.3
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526470
Biotype: lincRNA
Gene id: ENSG00000228862
Gene Name: RP11-91I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3069-3075
0.019
1
8mer
596-612
0.008
Not Conserved
6mer
1514-1534
0.002
0
RP1-5O6.6
hsa-miR-4677-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624867
Biotype: sense_intronic
Gene id: ENSG00000279038
Gene Name: RP1-5O6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-634
0.012
0
7mer
6404-6419
0.006
1
8mer+wobble
540-559
0.005
0
6mer
5221-5246
0.003
5
6mer
5485-5504
0.001
1
6mer
5112-5128
0.001
0
6mer
2214-2233
0.001
Not Conserved
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