LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-388G22.1
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520426
Biotype: lincRNA
Gene id: ENSG00000253322
Gene Name: RP11-388G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-324
0.024
4
7mer
154-164
0.005
1
RP4-668E10.4
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000612945
Biotype: lincRNA
Gene id: ENSG00000278254
Gene Name: RP4-668E10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-518
0.030
1
RP11-737F9.2
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520785
Biotype: sense_intronic
Gene id: ENSG00000253259
Gene Name: RP11-737F9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-316
0.030
4
RP11-495P10.1
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426101
Biotype: lincRNA
Gene id: ENSG00000231551
Gene Name: RP11-495P10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-151
0.026
2
RMST
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548886
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-792
0.014
3
6mer
663-668
0.008
7
6mer
513-518
0.005
2
6mer
44-65
0.003
0
AC139100.3
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615495
Biotype: antisense
Gene id: ENSG00000267251
Gene Name: AC139100.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-595
0.026
1
6mer
613-633
0.002
1
6mer
712-730
0.001
0
ACTN1-AS1
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553961
Biotype: antisense
Gene id: ENSG00000259062
Gene Name: ACTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-312
0.013
1
7mer
506-512
0.010
2
6mer
582-592
0.007
2
AP000330.8
hsa-miR-4677-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
373-388
0.024
1
6mer
277-302
0.003
1
6mer
1770-1779
0.003
0
RP11-53O19.1
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508123
Biotype: antisense
Gene id: ENSG00000251141
Gene Name: RP11-53O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-40
0.029
0
AC142472.6
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000612013
Biotype: lincRNA
Gene id: ENSG00000276728
Gene Name: AC142472.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1392-1418
0.025
Not Conserved
6mer
231-249
0.004
2
XLOC_010236
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020260
Biotype: transcript isomorph
Gene id: XLOC_010236
Gene Name: XLOC_010236
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-10
0.019
2
6mer
201-223
0.003
1
6mer
1247-1253
0.002
1
6mer
1748-1759
0.002
1
6mer
605-625
0.002
1
6mer
1083-1103
0.001
1
RP5-971N18.3
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608601
Biotype: antisense
Gene id: ENSG00000229766
Gene Name: RP5-971N18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-540
0.025
0
6mer
279-299
0.004
1
ERVH48-1
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1172-1183
0.017
0
6mer
2484-2491
0.013
0
RP11-798G7.6
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591950
Biotype: lincRNA
Gene id: ENSG00000267198
Gene Name: RP11-798G7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-162
0.029
1
RP11-337C18.8
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607149
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1962-1975
0.018
1
7mer
971-987
0.005
1
6mer
1368-1384
0.004
6
6mer
1990-2004
0.002
0
RP11-363J20.1
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554898
Biotype: lincRNA
Gene id: ENSG00000258957
Gene Name: RP11-363J20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1302-1325
0.024
4
6mer
1288-1310
0.003
1
6mer
1249-1275
0.002
Not Conserved
RP11-114H20.1
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2270-2287
0.015
0
7mer
767-773
0.008
1
6mer
49-74
0.004
1
6mer
1703-1716
0.002
Not Conserved
XLOC_010617
hsa-miR-4677-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022023
Biotype: transcript isomorph
Gene id: XLOC_010617
Gene Name: XLOC_010617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-207
0.016
1
7mer
343-367
0.013
2
AC139100.3
hsa-miR-4677-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588950
Biotype: antisense
Gene id: ENSG00000267251
Gene Name: AC139100.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-639
0.021
1
7mer
1296-1307
0.006
1
6mer
657-677
0.001
1
6mer
756-774
0.001
0
SGMS1-AS1
hsa-miR-4677-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4694-4708
0.009
1
6mer
12331-12346
0.005
1
8mer
8468-8493
0.004
1
7mer
9808-9827
0.003
1
6mer
265-284
0.003
1
6mer
3663-3684
0.002
1
6mer
5528-5553
0.001
1
6mer
2613-2633
0.001
2
6mer
7933-7955
0.001
Not Conserved
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