LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_004366
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10527-10546
0.007
1
7mer
12756-12778
0.006
1
7mer
9917-9923
0.004
0
7mer
12497-12506
0.004
1
6mer
3034-3038
0.002
0
6mer
9833-9841
0.002
0
6mer
7090-7111
0.002
0
6mer
3424-3448
0.001
1
6mer
7768-7779
0.001
1
7mer
5095-5120
0.001
0
RP5-1050D4.2
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000430920
Biotype: antisense
Gene id: ENSG00000234203
Gene Name: RP5-1050D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-136
0.022
2
6mer
25-38
0.005
4
6mer
335-356
0.003
1
AC114730.3
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420272
Biotype: antisense
Gene id: ENSG00000224272
Gene Name: AC114730.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-85
0.021
1
6mer
1134-1155
0.005
1
6mer
1044-1065
0.004
1
RP5-998H6.2
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450586
Biotype: lincRNA
Gene id: ENSG00000229957
Gene Name: RP5-998H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1618-1641
0.018
3
6mer
247-251
0.005
3
6mer
1005-1018
0.002
1
6mer
952-977
0.002
5
6mer
1200-1208
0.002
1
6mer
965-990
0.001
1
LINC00298
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015405.1
Biotype: lincRNA
Gene id: NR_015405.1 (gene)
Gene Name: LINC00298
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-464
0.015
Not Conserved
7mer
1792-1814
0.011
1
6mer
1673-1690
0.003
2
RP5-935K16.1
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602909
Biotype: lincRNA
Gene id: ENSG00000270081
Gene Name: RP5-935K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-744
0.025
1
7mer
1403-1408
0.005
0
XLOC_013163
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026836
Biotype: transcript isomorph
Gene id: XLOC_013163
Gene Name: XLOC_013163
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-313
0.014
2
7mer
256-265
0.007
0
6mer
432-457
0.005
2
6mer
484-500
0.003
1
RP11-513O17.2
hsa-miR-4677-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519241
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-485
0.030
0
LINC01203
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456091
Biotype: lincRNA
Gene id: ENSG00000226985
Gene Name: LINC01203
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-203
0.026
1
6mer
120-134
0.004
0
CTD-3216D2.5
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000609218
Biotype: sense_intronic
Gene id: ENSG00000272945
Gene Name: CTD-3216D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-309
0.026
2
6mer
429-447
0.003
0
RP11-195O1.5
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000572165
Biotype: processed_transcript
Gene id: ENSG00000279242
Gene Name: RP11-195O1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-403
0.030
6
RP11-209K10.2
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560818
Biotype: lincRNA
Gene id: ENSG00000259203
Gene Name: RP11-209K10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-96
0.030
7
RP11-513O17.2
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521132
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-171
0.030
0
XLOC_011740
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024424
Biotype: transcript isomorph
Gene id: XLOC_011740
Gene Name: XLOC_011740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6089-6102
0.013
0
6mer
6511-6517
0.004
1
6mer
449-468
0.003
0
6mer
554-572
0.003
1
6mer
935-962
0.002
2
6mer
5469-5473
0.002
1
6mer
5309-5334
0.001
0
6mer
2259-2265
0.001
0
6mer
5483-5493
0.001
1
CTA-246H3.12
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
628-646
0.030
0
LINC00689
hsa-miR-4677-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447563
Biotype: lincRNA
Gene id: ENSG00000231419
Gene Name: LINC00689
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-196
0.014
1
7mer
3470-3493
0.007
1
6mer
508-525
0.004
1
6mer
562-587
0.003
1
6mer
2278-2305
0.002
1
RP11-809C9.3
hsa-miR-4677-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622305
Biotype: lincRNA
Gene id: ENSG00000278295
Gene Name: RP11-809C9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
306-326
0.030
0
AC000403.4
hsa-miR-4677-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-397
0.015
0
7mer
2123-2138
0.006
1
6mer
3074-3081
0.003
0
6mer
2785-2801
0.003
1
6mer
375-385
0.002
0
RP11-397A16.3
hsa-miR-4677-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
764-780
0.030
1
XLOC_013936
hsa-miR-4677-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029013
Biotype: transcript isomorph
Gene id: XLOC_013936
Gene Name: XLOC_013936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
331-354
0.020
4
6mer
634-660
0.005
1
6mer
547-557
0.005
1
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