LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
C10orf40
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444900
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-344
0.023
2
6mer
1457-1461
0.004
1
6mer
789-809
0.003
2
CKMT2-AS1
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501927
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1893-1907
0.011
1
7mer
2333-2350
0.008
1
7mer
722-740
0.006
0
6mer
134-149
0.005
1
RP11-1070N10.6
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553913
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
7mer
3160-3182
0.008
0
6mer
484-508
0.003
1
6mer
2276-2295
0.002
2
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
KIAA0087
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2158-2172
0.013
7
7mer
4077-4088
0.009
2
6mer
3626-3640
0.003
1
6mer
968-980
0.002
0
6mer
3201-3205
0.002
1
6mer
3107-3113
0.001
0
FLJ36777
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501888
Biotype: lincRNA
Gene id: ENSG00000245468
Gene Name: FLJ36777
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1943-1957
0.015
1
7mer
1723-1735
0.012
1
6mer
1824-1832
0.003
0
RP11-730K11.1
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529160
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-31
0.030
1
RP11-967K21.1
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617468
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-204
0.014
1
7mer
1435-1441
0.007
0
6mer
2234-2238
0.005
3
6mer
1548-1573
0.004
5
XLOC_004945
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010430
Biotype: transcript isomorph
Gene id: XLOC_004945
Gene Name: XLOC_004945
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1427-1433
0.023
0
6mer
724-736
0.007
8
AC020571.3
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605907
Biotype: antisense
Gene id: ENSG00000229056
Gene Name: AC020571.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-298
0.018
0
6mer
677-682
0.012
5
RP11-589M4.1
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555969
Biotype: antisense
Gene id: ENSG00000259049
Gene Name: RP11-589M4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
786-801
0.025
2
6mer
473-488
0.005
1
RP11-231G15.3
hsa-miR-4677-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505002
Biotype: lincRNA
Gene id: ENSG00000248876
Gene Name: RP11-231G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-647
0.024
3
6mer
530-540
0.006
5
XLOC_011193
hsa-miR-4677-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023891
Biotype: transcript isomorph
Gene id: XLOC_011193
Gene Name: XLOC_011193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-72
0.030
0
XLOC_012575
hsa-miR-4677-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025765
Biotype: transcript isomorph
Gene id: XLOC_012575
Gene Name: XLOC_012575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-342
0.017
1
6mer
2520-2525
0.005
0
6mer
2426-2443
0.004
0
6mer
758-762
0.003
1
NARF-IT1
hsa-miR-4677-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584012
Biotype: sense_intronic
Gene id: ENSG00000266236
Gene Name: NARF-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-434
0.026
1
7mer
119-140
0.004
0
AC016735.1
hsa-miR-4677-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457457
Biotype: lincRNA
Gene id: ENSG00000224739
Gene Name: AC016735.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-43
0.022
3
6mer
106-133
0.008
3
FUT8-AS1
hsa-miR-4677-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621019
Biotype: antisense
Gene id: ENSG00000276116
Gene Name: FUT8-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-413
0.017
2
7mer
302-329
0.013
1
CTC-575N7.1
hsa-miR-4677-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515569
Biotype: antisense
Gene id: ENSG00000251680
Gene Name: CTC-575N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-250
0.030
1
RP11-132N15.3
hsa-miR-4677-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423643
Biotype: lincRNA
Gene id: ENSG00000224187
Gene Name: RP11-132N15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-324
0.030
5
CTD-2621I17.6
hsa-miR-4677-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587218
Biotype: lincRNA
Gene id: ENSG00000267522
Gene Name: CTD-2621I17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-313
0.014
2
7mer
256-265
0.007
0
6mer
432-457
0.005
2
6mer
484-500
0.003
1
XLOC_009250
hsa-miR-4677-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019440
Biotype: transcript isomorph
Gene id: XLOC_009250
Gene Name: XLOC_009250
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-241
0.021
2
6mer
617-629
0.005
2
6mer
459-464
0.003
1
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