LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-140I24.1
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562661
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-62
0.031
0
RP11-847H18.2
hsa-miR-4677-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501954
Biotype: antisense
Gene id: ENSG00000245482
Gene Name: RP11-847H18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-655
0.012
1
7mer
2062-2085
0.009
0
7mer
464-474
0.006
4
6mer
1150-1159
0.003
1
RP11-108B14.5
hsa-miR-4677-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564681
Biotype: lincRNA
Gene id: ENSG00000260205
Gene Name: RP11-108B14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2080-2102
0.021
1
7mer
395-403
0.010
1
SNHG1
hsa-miR-4677-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540725
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1234-1248
0.023
6
6mer
574-590
0.004
1
6mer
380-398
0.003
1
RP11-62C7.2
hsa-miR-4677-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560709
Biotype: lincRNA
Gene id: ENSG00000259278
Gene Name: RP11-62C7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-513
0.020
1
7mer
341-359
0.011
2
RP11-513O17.2
hsa-miR-4677-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517611
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-40
0.030
0
XLOC_005213
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011165
Biotype: transcript isomorph
Gene id: XLOC_005213
Gene Name: XLOC_005213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2570-2587
0.018
1
6mer
364-374
0.007
2
6mer
1622-1634
0.003
1
6mer
853-857
0.002
0
6mer
1152-1179
0.002
0
XLOC_000369
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001129
Biotype: transcript isomorph
Gene id: XLOC_000369
Gene Name: XLOC_000369
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-299
0.025
3
6mer
352-364
0.005
1
CH507-210P18.1
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623678
Biotype: lincRNA
Gene id: ENSG00000279998
Gene Name: CH507-210P18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
815-840
0.023
0
6mer
1343-1369
0.004
2
6mer
641-649
0.003
0
RP11-643G5.6
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528319
Biotype: lincRNA
Gene id: ENSG00000255429
Gene Name: RP11-643G5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-120
0.030
2
AF064858.6
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3686-3691
0.013
0
7mer
3732-3737
0.012
0
6mer
3766-3785
0.005
1
PRKG1-AS1
hsa-miR-4677-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
750-757
0.021
12
6mer
228-248
0.005
5
6mer
1346-1371
0.002
1
6mer
1225-1238
0.002
1
RP11-457M11.7
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000611708
Biotype: lincRNA
Gene id: ENSG00000275846
Gene Name: RP11-457M11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2570-2587
0.017
1
6mer
364-374
0.007
2
6mer
1622-1634
0.003
1
6mer
853-857
0.002
0
6mer
1152-1179
0.002
0
C16orf82
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000505035
Biotype: lincRNA
Gene id: ENSG00000234186
Gene Name: C16orf82
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2319-2338
0.024
1
6mer
248-254
0.003
1
6mer
196-200
0.003
0
RP11-661D19.3
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000559675
Biotype: lincRNA
Gene id: ENSG00000259508
Gene Name: RP11-661D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-476
0.025
1
6mer
94-110
0.005
1
AC002511.3
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000428426
Biotype: lincRNA
Gene id: ENSG00000232680
Gene Name: AC002511.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
394-407
0.021
0
6mer
912-928
0.004
2
6mer
212-232
0.002
1
6mer
347-372
0.002
1
XLOC_009818
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020191
Biotype: transcript isomorph
Gene id: XLOC_009818
Gene Name: XLOC_009818
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
760-786
0.030
1
LINC00559
hsa-miR-4677-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047489.1
Biotype: lincRNA
Gene id: NR_047489.1 (gene)
Gene Name: LINC00559
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-579
0.011
0
7mer
1586-1603
0.006
0
6mer
3687-3691
0.005
1
6mer
3063-3067
0.003
0
6mer
2921-2925
0.002
1
6mer
1213-1217
0.002
1
6mer
2850-2872
0.001
0
RP4-646N3.1
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000432359
Biotype: lincRNA
Gene id: ENSG00000235806
Gene Name: RP4-646N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-246
0.026
1
6mer
899-915
0.004
1
RP11-20L19.1
hsa-miR-4677-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549669
Biotype: lincRNA
Gene id: ENSG00000257787
Gene Name: RP11-20L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
764-789
0.021
3
6mer
207-225
0.005
0
6mer
828-849
0.005
1
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