LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
AC092168.2
hsa-miR-4677-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430586
Biotype: sense_intronic
Gene id: ENSG00000232034
Gene Name: AC092168.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
177-190
0.031
3
RP11-130C19.3
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608097
Biotype: antisense
Gene id: ENSG00000227914
Gene Name: RP11-130C19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
287-304
0.031
0
RP11-730K11.1
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501964
Biotype: antisense
Gene id: ENSG00000246790
Gene Name: RP11-730K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2389-2396
0.020
1
7mer
1866-1871
0.008
3
6mer
1758-1777
0.001
2
6mer
1750-1756
0.001
3
LOC285762
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_046100.1
Biotype: lincRNA
Gene id: NR_046100.1 (gene)
Gene Name: LOC285762
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3353-3369
0.013
0
7mer
615-620
0.006
1
6mer
335-358
0.004
2
6mer
2669-2673
0.004
3
6mer
839-854
0.002
1
6mer
2660-2665
0.002
3
AC004447.2
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594142
Biotype: antisense
Gene id: ENSG00000269131
Gene Name: AC004447.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-577
0.022
1
7mer
2217-2239
0.007
1
6mer
619-644
0.002
0
HIPK1-AS1
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427953
Biotype: retained_intron
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
478-504
0.023
5
6mer
1005-1024
0.005
1
6mer
665-691
0.003
0
RP11-114G22.1
hsa-miR-4677-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536744
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-192
0.026
1
6mer
166-175
0.005
4
RP11-330M19.1
hsa-miR-4677-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445070
Biotype: lincRNA
Gene id: ENSG00000225028
Gene Name: RP11-330M19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1438-1456
0.025
1
7mer
743-756
0.003
1
6mer
315-334
0.003
1
LINC00842
hsa-miR-4677-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_033957.2
Biotype: sense
Gene id: NR_033957.2 (gene)
Gene Name: LINC00842
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2575-2581
0.005
3
XLOC_004191
hsa-miR-4677-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007374
Biotype: transcript isomorph
Gene id: XLOC_004191
Gene Name: XLOC_004191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-571
0.020
3
6mer
365-385
0.006
3
6mer
507-513
0.005
1
TEX26-AS1
hsa-miR-4677-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000590344
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-39
0.022
2
6mer
453-472
0.006
1
6mer
253-272
0.003
1
LINC00663
hsa-miR-4677-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588223
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-200
0.031
Not Conserved
CTC-523E23.4
hsa-miR-4677-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587150
Biotype: lincRNA
Gene id: ENSG00000267767
Gene Name: CTC-523E23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
395-400
0.014
1
7mer
52-68
0.012
0
6mer
190-208
0.005
1
LINC00290
hsa-miR-4677-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512487
Biotype: lincRNA
Gene id: ENSG00000248197
Gene Name: LINC00290
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
564-574
0.020
3
6mer
368-388
0.006
3
6mer
510-516
0.005
1
LINC00559
hsa-miR-4677-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000569476
Biotype: lincRNA
Gene id: ENSG00000261446
Gene Name: LINC00559
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-579
0.011
0
7mer
1586-1603
0.006
0
6mer
3687-3691
0.005
1
6mer
3063-3067
0.003
0
6mer
2921-2925
0.002
1
6mer
1213-1217
0.002
1
6mer
2850-2872
0.001
0
CTD-2311M21.3
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568496
Biotype: antisense
Gene id: ENSG00000261821
Gene Name: CTD-2311M21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3592-3598
0.011
1
7mer
4247-4252
0.010
1
7mer
839-860
0.008
Not Conserved
6mer
3376-3388
0.001
1
RP1-45I4.2
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423500
Biotype: antisense
Gene id: ENSG00000225752
Gene Name: RP1-45I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-97
0.031
1
XLOC_008300
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017615
Biotype: transcript isomorph
Gene id: XLOC_008300
Gene Name: XLOC_008300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
628-652
0.010
0
7mer
3432-3439
0.008
Not Conserved
7mer
3009-3034
0.007
Not Conserved
7mer
1199-1212
0.002
Not Conserved
6mer
2957-2974
0.002
Not Conserved
6mer
1053-1061
0.001
Not Conserved
6mer
2391-2403
0.001
Not Conserved
6mer
1278-1302
0.001
Not Conserved
RP11-140I24.1
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000554640
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-62
0.029
0
6mer
1515-1535
0.001
1
RP11-244B22.6
hsa-miR-4677-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1542-1561
0.017
0
6mer
421-444
0.013
0
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