LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
C1QTNF1-AS1
hsa-miR-4677-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581579
Biotype: antisense
Gene id: ENSG00000265096
Gene Name: C1QTNF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-253
0.018
0
6mer
401-420
0.007
4
6mer
106-125
0.006
2
XLOC_009898
hsa-miR-4677-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020584
Biotype: transcript isomorph
Gene id: XLOC_009898
Gene Name: XLOC_009898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-66
0.026
2
6mer
340-359
0.005
1
XLOC_004989
hsa-miR-4677-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
918-937
0.021
1
6mer
1652-1656
0.004
1
6mer
439-453
0.004
2
6mer
388-401
0.002
0
RP11-1070N10.6
hsa-miR-4677-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000488933
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
7mer
3064-3086
0.009
0
6mer
484-508
0.003
1
6mer
2180-2199
0.002
2
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
XLOC_011403
hsa-miR-4677-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023589
Biotype: transcript isomorph
Gene id: XLOC_011403
Gene Name: XLOC_011403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-29
0.031
0
SMIM2-AS1
hsa-miR-4677-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444663
Biotype: antisense
Gene id: ENSG00000227258
Gene Name: SMIM2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-160
0.031
1
RP4-635E18.8
hsa-miR-4677-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607145
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-528
0.031
6
RP11-1070N10.6
hsa-miR-4677-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000461160
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.015
0
7mer
3519-3541
0.009
0
6mer
484-508
0.003
1
6mer
2635-2654
0.002
2
6mer
933-955
0.002
2
6mer
1769-1788
0.001
0
LINC00376
hsa-miR-4677-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000439454
Biotype: lincRNA
Gene id: ENSG00000227564
Gene Name: LINC00376
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-462
0.021
1
6mer
546-565
0.007
2
8mer+mismatch
510-530
0.004
0
RP11-111F5.4
hsa-miR-4677-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429818
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
957-969
0.031
0
KLHL7-AS1
hsa-miR-4677-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419813
Biotype: lincRNA
Gene id: ENSG00000230658
Gene Name: KLHL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2300-2320
0.020
1
7mer
576-598
0.005
Not Conserved
6mer
2186-2191
0.004
1
6mer
226-235
0.003
0
SNHG14
hsa-miR-4677-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5376-5394
0.016
3
7mer
2759-2775
0.006
0
6mer
7546-7560
0.006
2
6mer
3971-3991
0.002
1
6mer
2391-2417
0.001
1
CTD-2139B15.4
hsa-miR-4677-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505158
Biotype: lincRNA
Gene id: ENSG00000250822
Gene Name: CTD-2139B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2142-2161
0.014
1
7mer
1592-1612
0.013
1
6mer
501-524
0.005
3
SNHG14
hsa-miR-4677-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7236-7251
0.007
2
7mer
1473-1489
0.006
0
7mer
2876-2886
0.005
Not Conserved
6mer
8463-8467
0.004
0
7mer
7430-7442
0.002
1
7mer
7219-7232
0.002
0
6mer
1105-1131
0.002
1
6mer
6205-6221
0.002
0
6mer
6297-6315
0.001
1
RP11-1070N10.6
hsa-miR-4677-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000495847
Biotype: sense_overlapping
Gene id: ENSG00000259084
Gene Name: RP11-1070N10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.014
0
7mer
3452-3474
0.009
0
6mer
484-508
0.003
1
6mer
933-955
0.002
2
6mer
2568-2587
0.002
2
6mer
1769-1788
0.001
0
RP4-751H13.7
hsa-miR-4677-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608963
Biotype: antisense
Gene id: ENSG00000273419
Gene Name: RP4-751H13.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3876-3902
0.012
5
8mer
1433-1454
0.008
2
6mer
3851-3869
0.004
5
6mer
3968-3973
0.003
1
6mer
932-949
0.002
0
6mer
2342-2355
0.001
3
6mer
1667-1692
0.001
2
AE000661.37
hsa-miR-4677-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000514473
Biotype: antisense
Gene id: ENSG00000251002
Gene Name: AE000661.37
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-165
0.025
1
6mer
627-641
0.003
2
6mer
841-857
0.003
2
C10orf40
hsa-miR-4677-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430888
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-276
0.031
2
RP11-510D19.1
hsa-miR-4677-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000566582
Biotype: lincRNA
Gene id: ENSG00000260676
Gene Name: RP11-510D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
751-768
0.010
0
8mer
1580-1599
0.007
0
7mer
2035-2055
0.006
1
6mer
2073-2097
0.004
1
6mer
2351-2367
0.003
0
RP11-576I22.2
hsa-miR-4677-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446102
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-350
0.016
3
7mer
1162-1178
0.015
1
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