LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-4677-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
ALDH1L1-AS2
hsa-miR-4677-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000500525
Biotype: antisense
Gene id: ENSG00000246022
Gene Name: ALDH1L1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-169
0.018
1
7mer
510-521
0.007
0
6mer
1281-1295
0.003
1
6mer
591-614
0.002
1
6mer
1153-1172
0.002
0
CITF22-92A6.1
hsa-miR-4677-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608290
Biotype: lincRNA
Gene id: ENSG00000273145
Gene Name: CITF22-92A6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1021-1027
0.032
1
AC004510.3
hsa-miR-4677-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587970
Biotype: lincRNA
Gene id: ENSG00000267308
Gene Name: AC004510.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
256-263
0.020
1
7mer
226-246
0.012
0
XLOC_008388
hsa-miR-4677-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017701
Biotype: transcript isomorph
Gene id: XLOC_008388
Gene Name: XLOC_008388
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-146
0.032
0
FAM230B
hsa-miR-4677-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424410
Biotype: lincRNA
Gene id: ENSG00000215498
Gene Name: FAM230B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-719
0.032
0
RP11-21L23.4
hsa-miR-4677-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533437
Biotype: antisense
Gene id: ENSG00000254632
Gene Name: RP11-21L23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-319
0.025
1
7mer
198-204
0.007
0
RN7SL832P
hsa-miR-4677-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607781
Biotype: lincRNA
Gene id: ENSG00000243819
Gene Name: RN7SL832P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1506-1511
0.013
1
7mer
1175-1188
0.010
2
7mer
1618-1636
0.009
0
XLOC_000950
hsa-miR-4677-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001620
Biotype: transcript isomorph
Gene id: XLOC_000950
Gene Name: XLOC_000950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-163
0.018
4
7mer
418-423
0.013
1
APELA
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_038825.1
Biotype: sense
Gene id: NR_038825.1 (gene)
Gene Name: APELA
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2504-2518
0.019
2
6mer
262-266
0.004
2
6mer
251-255
0.004
1
6mer
644-662
0.003
1
6mer
132-155
0.002
0
XLOC_001454
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003664
Biotype: transcript isomorph
Gene id: XLOC_001454
Gene Name: XLOC_001454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
514-528
0.029
Not Conserved
6mer
539-565
0.003
0
RP11-497D6.5
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606686
Biotype: lincRNA
Gene id: ENSG00000272397
Gene Name: RP11-497D6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2067-2093
0.021
1
7mer
1284-1301
0.007
0
6mer
1852-1873
0.002
0
6mer
1175-1191
0.002
3
RGS5
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000528689
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
147-171
0.032
2
DKFZp434J0226
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596066
Biotype: retained_intron
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3121-3148
0.026
1
6mer
2422-2426
0.004
3
6mer
2375-2398
0.002
Not Conserved
RP11-24P4.1
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519996
Biotype: lincRNA
Gene id: ENSG00000254334
Gene Name: RP11-24P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-669
0.014
2
7mer
1385-1390
0.014
1
6mer
841-865
0.004
3
RP11-798K23.1
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503218
Biotype: lincRNA
Gene id: ENSG00000250674
Gene Name: RP11-798K23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-391
0.031
1
XLOC_002003
hsa-miR-4677-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004157
Biotype: transcript isomorph
Gene id: XLOC_002003
Gene Name: XLOC_002003
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-336
0.031
2
CTC-523E23.4
hsa-miR-4677-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590963
Biotype: lincRNA
Gene id: ENSG00000267767
Gene Name: CTC-523E23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-317
0.018
1
6mer
93-111
0.005
0
6mer
1920-1945
0.003
1
6mer
965-991
0.002
1
6mer
915-938
0.002
2
RP1-149A16.3
hsa-miR-4677-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000420171
Biotype: lincRNA
Gene id: ENSG00000230736
Gene Name: RP1-149A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1136-1151
0.019
1
7mer
451-470
0.010
1
6mer
488-508
0.002
0
RP11-795J1.1
hsa-miR-4677-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415787
Biotype: antisense
Gene id: ENSG00000236466
Gene Name: RP11-795J1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-553
0.020
3
6mer
193-211
0.007
3
6mer
352-360
0.005
1
RP11-431M7.2
hsa-miR-4677-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504344
Biotype: antisense
Gene id: ENSG00000251438
Gene Name: RP11-431M7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
496-522
0.031
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept