LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-506B6.6
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590804
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-511
0.027
2
6mer
547-561
0.006
5
XLOC_009112
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019279
Biotype: transcript isomorph
Gene id: XLOC_009112
Gene Name: XLOC_009112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-314
0.028
4
6mer
241-259
0.004
1
AGAP2-AS1
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542466
Biotype: antisense
Gene id: ENSG00000255737
Gene Name: AGAP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1087-1101
0.032
8
FLJ36777
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_027441.1
Biotype: lincRNA
Gene id: NR_027441.1 (gene)
Gene Name: FLJ36777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-554
0.028
1
6mer
1444-1457
0.004
1
RP11-103B5.4
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614934
Biotype: sense_intronic
Gene id: ENSG00000277840
Gene Name: RP11-103B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-132
0.032
9
AC002480.5
hsa-miR-4677-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000442252
Biotype: sense_overlapping
Gene id: ENSG00000225541
Gene Name: AC002480.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1182-1200
0.022
1
6mer
860-876
0.004
2
6mer
770-787
0.004
1
6mer
843-853
0.002
0
RP1-20B11.2
hsa-miR-4677-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430842
Biotype: antisense
Gene id: ENSG00000230433
Gene Name: RP1-20B11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-323
0.029
1
6mer
491-504
0.003
0
AC024619.2
hsa-miR-4677-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426489
Biotype: sense_intronic
Gene id: ENSG00000238007
Gene Name: AC024619.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-131
0.027
2
6mer
347-365
0.004
1
RP11-210M15.1
hsa-miR-4677-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000548231
Biotype: antisense
Gene id: ENSG00000258010
Gene Name: RP11-210M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1225-1231
0.021
0
6mer
378-393
0.004
1
6mer
1653-1658
0.003
Not Conserved
6mer
1137-1142
0.002
1
6mer
903-916
0.002
1
DEPDC1-AS1
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428732
Biotype: antisense
Gene id: ENSG00000234264
Gene Name: DEPDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-409
0.026
0
7mer
465-477
0.006
1
RP11-411K7.1
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000511369
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
40-58
0.032
1
XLOC_000730
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5235-5252
0.020
1
6mer
5415-5437
0.005
3
6mer
1121-1143
0.002
2
7mer
4221-4234
0.002
1
6mer
3117-3136
0.002
2
6mer
1341-1345
0.002
Not Conserved
RP11-556G22.2
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511835
Biotype: antisense
Gene id: ENSG00000248343
Gene Name: RP11-556G22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-337
0.032
4
RP11-144L1.4
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419738
Biotype: antisense
Gene id: ENSG00000236656
Gene Name: RP11-144L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
781-797
0.017
8
6mer
507-527
0.006
6
6mer
1750-1772
0.004
0
6mer
889-893
0.003
2
6mer
1980-2007
0.003
1
STARD13-AS
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-311
0.032
1
VCAN-AS1
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512090
Biotype: antisense
Gene id: ENSG00000249835
Gene Name: VCAN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-250
0.017
4
7mer
383-397
0.011
0
6mer
195-215
0.004
2
LOC284581
hsa-miR-4677-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046098.1
Biotype: lincRNA
Gene id: NR_046098.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
801-828
0.014
0
7mer
1735-1745
0.011
0
6mer
917-944
0.004
1
6mer
874-895
0.003
0
XLOC_004445
hsa-miR-4677-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009252
Biotype: transcript isomorph
Gene id: XLOC_004445
Gene Name: XLOC_004445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2437-2463
0.030
0
6mer
960-981
0.002
0
RP11-391M1.4
hsa-miR-4677-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1129-1150
0.032
0
RP11-363G10.2
hsa-miR-4677-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-100
0.016
0
7mer
1597-1603
0.009
1
6mer
2296-2321
0.005
1
6mer
654-667
0.002
Not Conserved
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