LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-815J21.3
hsa-miR-4677-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560712
Biotype: antisense
Gene id: ENSG00000259276
Gene Name: RP11-815J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
151-164
0.033
1
XLOC_006486
hsa-miR-4677-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013856
Biotype: transcript isomorph
Gene id: XLOC_006486
Gene Name: XLOC_006486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-260
0.033
0
XLOC_008510
hsa-miR-4677-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018230
Biotype: transcript isomorph
Gene id: XLOC_008510
Gene Name: XLOC_008510
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1802-1810
0.011
1
7mer
842-864
0.007
0
6mer
2009-2015
0.006
3
6mer
144-148
0.006
3
6mer
566-581
0.003
1
LINC01141
hsa-miR-4677-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426428
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2592-2609
0.021
1
6mer
2772-2794
0.005
3
6mer
343-365
0.004
2
6mer
563-567
0.003
Not Conserved
RP11-380I10.4
hsa-miR-4677-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521731
Biotype: antisense
Gene id: ENSG00000253690
Gene Name: RP11-380I10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-545
0.030
1
6mer
381-395
0.003
1
RP4-737E23.7
hsa-miR-4677-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000622708
Biotype: lincRNA
Gene id: ENSG00000275179
Gene Name: RP4-737E23.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
408-425
0.026
1
6mer
161-177
0.007
2
SPATA17-AS1
hsa-miR-4677-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415765
Biotype: antisense
Gene id: ENSG00000234070
Gene Name: SPATA17-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-341
0.033
1
RBMS3-AS2
hsa-miR-4677-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601343
Biotype: antisense
Gene id: ENSG00000203506
Gene Name: RBMS3-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-366
0.032
3
LINC00608
hsa-miR-4677-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
687-702
0.026
1
6mer
832-837
0.004
0
6mer
108-126
0.003
Not Conserved
XXbac-BPG254F23.7
hsa-miR-4677-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-225
0.032
0
RP11-661G16.1
hsa-miR-4677-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554967
Biotype: antisense
Gene id: ENSG00000258437
Gene Name: RP11-661G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-461
0.018
1
7mer
529-534
0.015
2
AC091633.3
hsa-miR-4677-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417011
Biotype: antisense
Gene id: ENSG00000223711
Gene Name: AC091633.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-101
0.021
4
7mer
330-347
0.009
1
6mer
352-373
0.002
1
RP11-24M17.4
hsa-miR-4677-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623240
Biotype: TEC
Gene id: ENSG00000260288
Gene Name: RP11-24M17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1421-1439
0.032
1
XLOC_009900
hsa-miR-4677-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020237
Biotype: transcript isomorph
Gene id: XLOC_009900
Gene Name: XLOC_009900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1262-1281
0.030
0
6mer
857-861
0.002
1
LINC00663
hsa-miR-4677-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589508
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-95
0.032
Not Conserved
XLOC_003387
hsa-miR-4677-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006757
Biotype: transcript isomorph
Gene id: XLOC_003387
Gene Name: XLOC_003387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1772-1785
0.005
Not Conserved
7mer
1384-1397
0.004
Not Conserved
7mer
1329-1342
0.003
Not Conserved
6mer
1938-1950
0.003
Not Conserved
7mer
1213-1226
0.003
Not Conserved
6mer
1883-1895
0.002
Not Conserved
6mer
1828-1840
0.002
Not Conserved
6mer
1553-1565
0.002
Not Conserved
6mer
1712-1724
0.002
Not Conserved
6mer
1018-1038
0.002
0
6mer
1098-1110
0.001
0
6mer
1269-1281
0.001
Not Conserved
6mer
1159-1171
0.001
Not Conserved
XLOC_004457
hsa-miR-4677-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010010
Biotype: transcript isomorph
Gene id: XLOC_004457
Gene Name: XLOC_004457
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3111-3117
0.010
1
7mer
2742-2762
0.008
1
6mer
3108-3127
0.005
1
6mer
445-464
0.004
1
6mer
888-892
0.002
1
6mer
2140-2152
0.002
2
XLOC_008759
hsa-miR-4677-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018460
Biotype: transcript isomorph
Gene id: XLOC_008759
Gene Name: XLOC_008759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-280
0.016
1
8mer
166-173
0.011
Not Conserved
6mer
312-328
0.006
2
RP11-434E6.2
hsa-miR-4677-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566649
Biotype: lincRNA
Gene id: ENSG00000261803
Gene Name: RP11-434E6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1829-1842
0.021
8
6mer
1310-1326
0.003
2
7mer
1560-1587
0.003
1
6mer
1574-1600
0.003
1
6mer
947-968
0.002
0
AC003973.5
hsa-miR-4677-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600071
Biotype: lincRNA
Gene id: ENSG00000269199
Gene Name: AC003973.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-378
0.014
0
6mer
155-168
0.011
1
6mer
63-83
0.007
0
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