LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC01101
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027181.1
Biotype: lincRNA
Gene id: NR_027181.1 (gene)
Gene Name: LINC01101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1602-1619
0.028
2
6mer
1562-1584
0.003
2
6mer
467-488
0.003
1
AC016629.3
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596029
Biotype: antisense
Gene id: ENSG00000269600
Gene Name: AC016629.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-268
0.024
Not Conserved
7mer
54-74
0.009
0
XXbac-BPG13B8.10
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436804
Biotype: lincRNA
Gene id: ENSG00000229274
Gene Name: XXbac-BPG13B8.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
723-747
0.033
0
AC009120.4
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569389
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-204
0.030
4
6mer
629-650
0.003
0
GSN-AS1
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414544
Biotype: antisense
Gene id: ENSG00000235865
Gene Name: GSN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4371-4378
0.019
3
7mer
3740-3761
0.005
1
6mer
684-691
0.003
1
6mer
4322-4347
0.003
3
6mer
3068-3081
0.003
3
RP11-513I15.6
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429998
Biotype: retained_intron
Gene id: ENSG00000225339
Gene Name: RP11-513I15.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-104
0.016
5
7mer
2844-2869
0.008
2
7mer
2003-2019
0.005
1
6mer
4079-4083
0.002
1
6mer
2628-2646
0.001
1
6mer
4169-4190
0.001
1
6mer
4243-4247
0.001
2
RP11-324O2.6
hsa-miR-4677-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424422
Biotype: antisense
Gene id: ENSG00000270599
Gene Name: RP11-324O2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-213
0.033
3
RP11-290O12.2
hsa-miR-4677-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000624941
Biotype: antisense
Gene id: ENSG00000280241
Gene Name: RP11-290O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
638-650
0.030
5
6mer
737-762
0.003
1
RP11-74J13.8
hsa-miR-4677-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615685
Biotype: antisense
Gene id: ENSG00000278390
Gene Name: RP11-74J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-354
0.030
7
6mer
279-300
0.003
Not Conserved
XLOC_009499
hsa-miR-4677-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019701
Biotype: transcript isomorph
Gene id: XLOC_009499
Gene Name: XLOC_009499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-215
0.027
2
6mer
1512-1522
0.006
1
XLOC_000246
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000044
Biotype: transcript isomorph
Gene id: XLOC_000246
Gene Name: XLOC_000246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-633
0.028
1
6mer
1868-1883
0.005
1
RP11-154D6.1
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000615921
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-378
0.033
1
AC007364.1
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000295052
Biotype: lincRNA
Gene id: ENSG00000162947
Gene Name: AC007364.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-198
0.027
1
6mer
1427-1448
0.004
2
6mer
1514-1524
0.003
0
HAND2-AS1
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-736
0.027
10
6mer
277-296
0.004
1
6mer
1522-1535
0.002
2
SLC2A1-AS1
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416689
Biotype: retained_intron
Gene id: ENSG00000227533
Gene Name: SLC2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-468
0.016
1
7mer
639-659
0.007
0
7mer
2294-2300
0.004
1
6mer
2713-2725
0.003
1
6mer
2471-2480
0.003
1
RP11-624L4.1
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560197
Biotype: lincRNA
Gene id: ENSG00000259345
Gene Name: RP11-624L4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-296
0.015
1
8mer
679-685
0.010
0
6mer
68-86
0.004
3
6mer
889-914
0.004
3
XLOC_003312
hsa-miR-4677-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006703
Biotype: transcript isomorph
Gene id: XLOC_003312
Gene Name: XLOC_003312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-134
0.033
0
LINC01359
hsa-miR-4677-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-246
0.026
2
6mer
958-972
0.002
1
6mer
1221-1238
0.002
0
6mer
1207-1221
0.001
1
6mer
1142-1157
0.001
1
LINC01515
hsa-miR-4677-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601926
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-748
0.033
1
RP3-512E2.2
hsa-miR-4677-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445838
Biotype: antisense
Gene id: ENSG00000226455
Gene Name: RP3-512E2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-70
0.029
4
6mer
588-605
0.003
1
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