LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-140I24.1
hsa-miR-4677-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561875
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-52
0.031
0
6mer
299-310
0.003
1
LINC01227
hsa-miR-4677-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561719
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-189
0.028
1
7mer
128-153
0.006
Not Conserved
FAM87B
hsa-miR-4677-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103536.1
Biotype: lincRNA
Gene id: NR_103536.1 (gene)
Gene Name: FAM87B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1759-1783
0.017
0
7mer
729-753
0.008
1
6mer
1064-1073
0.005
1
6mer
1369-1389
0.003
0
RP11-515O17.3
hsa-miR-4677-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576751
Biotype: lincRNA
Gene id: ENSG00000262079
Gene Name: RP11-515O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-305
0.022
3
6mer
189-193
0.006
4
6mer
17-44
0.005
1
RP5-1057I20.4
hsa-miR-4677-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000599515
Biotype: antisense
Gene id: ENSG00000268069
Gene Name: RP5-1057I20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
856-875
0.024
8
7mer
316-334
0.010
0
NRG3-AS1
hsa-miR-4677-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000505481
Biotype: retained_intron
Gene id: ENSG00000225738
Gene Name: NRG3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-155
0.031
3
6mer
212-216
0.003
0
RFPL3S
hsa-miR-4677-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_002596.2
Biotype: sense
Gene id: NR_002596.2 (gene)
Gene Name: RFPL3S
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1161-1179
0.017
1
6mer
144-159
0.008
3
7mer
624-629
0.008
1
FAM87A
hsa-miR-4677-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-189
0.018
1
7mer
874-884
0.009
Not Conserved
7mer
1194-1218
0.004
1
6mer
559-579
0.003
0
AF131216.6
hsa-miR-4677-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
112-130
0.015
2
7mer
35-47
0.015
0
7mer
4035-4041
0.002
0
6mer
2750-2754
0.002
1
AC021021.2
hsa-miR-4677-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436082
Biotype: lincRNA
Gene id: ENSG00000226488
Gene Name: AC021021.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
332-345
0.033
1
RP1-93H18.7
hsa-miR-4677-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606179
Biotype: lincRNA
Gene id: ENSG00000272403
Gene Name: RP1-93H18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-57
0.028
2
6mer
60-71
0.006
1
RP11-280K24.4
hsa-miR-4677-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553312
Biotype: sense_overlapping
Gene id: ENSG00000258535
Gene Name: RP11-280K24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3200-3211
0.010
0
8mer
2045-2051
0.005
1
7mer
3824-3845
0.005
1
7mer
4104-4110
0.004
Not Conserved
6mer
2942-2956
0.002
6
6mer
1170-1174
0.002
0
6mer
4319-4345
0.001
1
6mer
4460-4476
0.001
0
6mer
1725-1740
0.001
0
6mer
2811-2835
0.001
1
6mer
1757-1784
0.000
0
RP4-705D16.3
hsa-miR-4677-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425939
Biotype: antisense
Gene id: ENSG00000228809
Gene Name: RP4-705D16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
871-882
0.031
Not Conserved
6mer
571-591
0.002
0
RP11-543D5.1
hsa-miR-4677-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454285
Biotype: lincRNA
Gene id: ENSG00000227947
Gene Name: RP11-543D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-324
0.017
1
7mer
35-62
0.016
2
XLOC_011174
hsa-miR-4677-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023306
Biotype: transcript isomorph
Gene id: XLOC_011174
Gene Name: XLOC_011174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1212-1233
0.011
1
7mer
562-585
0.010
1
7mer
906-920
0.007
0
6mer
1300-1317
0.005
1
RP4-530I15.9
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431019
Biotype: antisense
Gene id: ENSG00000232043
Gene Name: RP4-530I15.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-68
0.010
1
7mer
3124-3130
0.006
1
6mer
307-330
0.004
1
6mer
235-251
0.004
2
6mer
1039-1066
0.003
2
7mer
2264-2277
0.002
0
6mer
2062-2082
0.001
0
6mer
3403-3423
0.001
1
6mer
1011-1027
0.001
1
6mer
2050-2055
0.000
1
BOLA3-AS1
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423477
Biotype: antisense
Gene id: ENSG00000225439
Gene Name: BOLA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1540-1562
0.033
1
LINC01118
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409912
Biotype: lincRNA
Gene id: ENSG00000222005
Gene Name: LINC01118
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
973-978
0.030
4
6mer
203-229
0.004
0
XLOC_009530
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020122
Biotype: transcript isomorph
Gene id: XLOC_009530
Gene Name: XLOC_009530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-172
0.033
1
RBM26-AS1
hsa-miR-4677-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606584
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
725-749
0.023
2
6mer
891-902
0.005
2
6mer
679-700
0.005
1
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