LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-314D7.3
hsa-miR-4677-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548029
Biotype: lincRNA
Gene id: ENSG00000257682
Gene Name: RP11-314D7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-193
0.018
1
7mer
504-525
0.016
1
ERVH48-1
hsa-miR-4677-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-736
0.022
0
6mer
2037-2050
0.012
0
RP6-201G10.2
hsa-miR-4677-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561973
Biotype: lincRNA
Gene id: ENSG00000260118
Gene Name: RP6-201G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1080-1100
0.024
1
7mer
941-954
0.010
0
DYNLL1-AS1
hsa-miR-4677-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_038854.1
Biotype: antisense
Gene id: NR_038854.1 (gene)
Gene Name: DYNLL1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-263
0.017
4
7mer
1361-1377
0.007
1
7mer
236-251
0.007
1
6mer
781-803
0.003
0
LINC00152
hsa-miR-4677-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409054
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
615-634
0.011
1
7mer
392-398
0.009
1
6mer
216-238
0.009
4
6mer
584-598
0.003
1
6mer
626-653
0.002
0
LINC00973
hsa-miR-4677-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473756
Biotype: lincRNA
Gene id: ENSG00000240476
Gene Name: LINC00973
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
894-907
0.017
0
7mer
356-375
0.011
4
6mer
100-124
0.006
5
RP11-47J17.3
hsa-miR-4677-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526953
Biotype: antisense
Gene id: ENSG00000254688
Gene Name: RP11-47J17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-249
0.034
1
AC008103.4
hsa-miR-4677-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-264
0.028
1
6mer
1018-1041
0.006
0
XLOC_006912
hsa-miR-4677-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015340
Biotype: transcript isomorph
Gene id: XLOC_006912
Gene Name: XLOC_006912
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-286
0.034
3
XLOC_010336
hsa-miR-4677-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021745
Biotype: transcript isomorph
Gene id: XLOC_010336
Gene Name: XLOC_010336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-429
0.025
1
6mer
1150-1171
0.005
1
6mer
834-847
0.004
1
SVIL-AS1
hsa-miR-4677-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000623175
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-107
0.025
1
6mer
366-384
0.009
1
STARD13-AS
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608205
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-299
0.034
1
LINC00608
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432733
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
687-702
0.019
1
7mer
1800-1811
0.005
1
7mer
1258-1273
0.003
1
6mer
108-126
0.003
Not Conserved
6mer
832-837
0.002
0
6mer
1081-1094
0.002
0
AC005307.3
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592347
Biotype: lincRNA
Gene id: ENSG00000267243
Gene Name: AC005307.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2354-2372
0.012
1
6mer
2763-2788
0.009
7
7mer
817-833
0.005
Not Conserved
6mer
2993-3003
0.004
2
6mer
2676-2695
0.003
3
6mer
1536-1554
0.001
0
DYNLL1-AS1
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500741
Biotype: antisense
Gene id: ENSG00000248008
Gene Name: DYNLL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-273
0.017
4
7mer
1371-1387
0.007
1
7mer
246-261
0.007
1
6mer
791-813
0.003
0
LINC01016
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000506222
Biotype: lincRNA
Gene id: ENSG00000249346
Gene Name: LINC01016
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2111-2118
0.021
1
6mer
2992-3015
0.006
3
6mer
3009-3033
0.005
1
6mer
1990-2014
0.002
1
RP11-333E1.1
hsa-miR-4677-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_034082.1
Biotype: antisense
Gene id: NR_034082.1 (gene)
Gene Name: RP11-333E1.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-320
0.022
1
6mer
577-603
0.006
5
6mer
1184-1205
0.003
4
6mer
122-145
0.003
0
LINC01241
hsa-miR-4677-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423326
Biotype: lincRNA
Gene id: ENSG00000236306
Gene Name: LINC01241
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-353
0.027
6
6mer
105-113
0.006
5
XLOC_010445
hsa-miR-4677-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-590
0.012
0
9mer
1257-1281
0.006
2
7mer
1652-1673
0.006
1
6mer
1211-1232
0.003
1
6mer
3908-3912
0.002
2
6mer
2225-2229
0.002
2
6mer
1423-1434
0.002
2
6mer
1683-1699
0.001
2
FAM87B
hsa-miR-4677-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000326734
Biotype: lincRNA
Gene id: ENSG00000177757
Gene Name: FAM87B
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1759-1783
0.017
0
7mer
729-753
0.008
1
6mer
1064-1073
0.005
1
6mer
1369-1389
0.003
0
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