LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
CH17-140K24.1
hsa-miR-4677-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000624102
Biotype: lincRNA
Gene id: ENSG00000279558
Gene Name: CH17-140K24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-366
0.035
1
RP11-36B6.1
hsa-miR-4677-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604514
Biotype: lincRNA
Gene id: ENSG00000271522
Gene Name: RP11-36B6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1234-1254
0.018
1
7mer
1072-1091
0.014
1
6mer
712-726
0.003
0
FAM87A
hsa-miR-4677-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602608
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1400-1424
0.012
1
7mer
562-572
0.011
Not Conserved
6mer
1187-1197
0.005
0
6mer
247-267
0.004
0
7mer
945-966
0.002
Not Conserved
RP11-65D24.2
hsa-miR-4677-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607406
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1646-1653
0.024
0
7mer
379-384
0.006
1
7mer
170-194
0.005
1
MIR29B1
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
816-836
0.007
0
7mer
3973-3997
0.007
1
7mer
5521-5543
0.007
1
7mer
2652-2675
0.005
1
7mer
2435-2458
0.005
1
6mer
1060-1074
0.002
1
6mer
4170-4184
0.002
1
6mer
3810-3833
0.001
Not Conserved
RP11-93G5.1
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617568
Biotype: lincRNA
Gene id: ENSG00000274317
Gene Name: RP11-93G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4063-4085
0.009
1
7mer
706-729
0.006
0
6mer
4749-4753
0.005
1
6mer
884-888
0.004
1
6mer
4713-4737
0.003
Not Conserved
6mer
605-624
0.003
1
7mer
3296-3310
0.003
0
6mer
2920-2945
0.002
1
6mer
981-1003
0.001
0
RP11-17G12.3
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543925
Biotype: antisense
Gene id: ENSG00000256746
Gene Name: RP11-17G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-325
0.029
1
6mer
199-225
0.006
5
CTD-3220F14.1
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612804
Biotype: lincRNA
Gene id: ENSG00000267605
Gene Name: CTD-3220F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1593-1612
0.023
2
8mer
1310-1331
0.006
Not Conserved
6mer
1977-1993
0.003
0
6mer
1161-1188
0.002
0
LOC388692
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9806-9812
0.012
1
7mer
2381-2396
0.005
1
7mer
6745-6759
0.004
0
7mer
8945-8950
0.003
1
6mer
1166-1171
0.003
0
6mer
10949-10972
0.002
1
6mer
1776-1802
0.002
1
6mer
7563-7574
0.002
0
6mer
10448-10471
0.002
0
6mer
1298-1325
0.001
0
RP11-478K15.6
hsa-miR-4677-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1488-1494
0.020
0
7mer
1323-1349
0.005
1
6mer
2898-2902
0.004
1
6mer
232-252
0.003
0
6mer
2993-3012
0.003
1
CTD-2647L4.4
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560865
Biotype: sense_intronic
Gene id: ENSG00000259366
Gene Name: CTD-2647L4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-265
0.026
3
7mer
165-170
0.008
0
XLOC_012997
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
1527-1544
0.031
1
6mer
632-651
0.004
0
LINC01010
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456749
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-51
0.026
1
6mer
1072-1076
0.005
1
6mer
176-187
0.004
2
RFPL3S
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_001450.3
Biotype: sense
Gene id: NR_001450.3 (gene)
Gene Name: RFPL3S
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1074-1092
0.017
1
7mer
624-629
0.009
1
6mer
144-159
0.008
3
LINC00898
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000380990
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3936-3942
0.021
1
7mer
3642-3656
0.006
1
7mer
1953-1961
0.002
0
6mer
704-715
0.002
1
6mer
1756-1775
0.001
0
7mer
1341-1364
0.001
0
6mer
1231-1254
0.001
Not Conserved
XLOC_011054
hsa-miR-4677-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022770
Biotype: transcript isomorph
Gene id: XLOC_011054
Gene Name: XLOC_011054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-285
0.034
0
RP11-22N19.2
hsa-miR-4677-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609281
Biotype: antisense
Gene id: ENSG00000273320
Gene Name: RP11-22N19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-324
0.034
1
RP11-424D14.1
hsa-miR-4677-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425517
Biotype: lincRNA
Gene id: ENSG00000223883
Gene Name: RP11-424D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-486
0.015
3
7mer
178-186
0.010
0
7mer
200-215
0.009
0
RP11-1006G14.2
hsa-miR-4677-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565543
Biotype: lincRNA
Gene id: ENSG00000259783
Gene Name: RP11-1006G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-177
0.034
0
RP11-69H14.6
hsa-miR-4677-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616229
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-361
0.034
3
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