LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002543
hsa-miR-4677-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004629
Biotype: transcript isomorph
Gene id: XLOC_002543
Gene Name: XLOC_002543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-552
0.010
Not Conserved
7mer
2923-2938
0.010
Not Conserved
6mer
3087-3103
0.007
2
7mer
2344-2367
0.004
1
6mer
2451-2474
0.004
0
XLOC_004839
hsa-miR-4677-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010350
Biotype: transcript isomorph
Gene id: XLOC_004839
Gene Name: XLOC_004839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-25
0.013
0
7mer
3993-3998
0.009
3
6mer
129-144
0.005
1
6mer
2118-2140
0.002
3
6mer
1568-1582
0.002
0
6mer
2977-2999
0.002
1
6mer
1293-1297
0.002
0
MUC19
hsa-miR-4677-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000474954
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-615
0.017
1
7mer
3110-3128
0.006
Not Conserved
7mer
2818-2833
0.004
2
7mer
2116-2121
0.004
2
6mer
16-28
0.003
Not Conserved
XLOC_012885
hsa-miR-4677-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026566
Biotype: transcript isomorph
Gene id: XLOC_012885
Gene Name: XLOC_012885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-259
0.010
1
7mer
909-915
0.005
0
6mer
5146-5170
0.005
1
7mer
4336-4360
0.005
1
8mer
3997-4003
0.004
0
6mer
4085-4106
0.002
1
6mer
1811-1836
0.001
1
7mer
1712-1729
0.001
Not Conserved
6mer
3746-3760
0.001
1
7mer
1730-1751
0.001
Not Conserved
6mer
2164-2187
0.001
0
CTA-292E10.9
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-245
0.006
1
7mer
15356-15370
0.004
1
7mer
12201-12207
0.004
3
6mer
1922-1947
0.003
9
6mer
1316-1327
0.003
4
6mer
6409-6421
0.003
3
6mer
2362-2373
0.002
1
6mer
20673-20677
0.002
0
6mer
880-899
0.002
1
6mer
15041-15045
0.001
1
6mer
23611-23624
0.001
3
6mer
10138-10142
0.001
0
6mer
18417-18426
0.001
0
6mer
12296-12310
0.001
0
LINC01515
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598902
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-574
0.035
1
XLOC_007223
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015176
Biotype: transcript isomorph
Gene id: XLOC_007223
Gene Name: XLOC_007223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
792-811
0.009
1
7mer
2800-2809
0.006
0
8mer
2199-2214
0.006
1
7mer
4255-4278
0.006
0
6mer
499-503
0.003
0
6mer
4494-4514
0.003
1
6mer
475-499
0.002
0
RP11-298J20.3
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449984
Biotype: antisense
Gene id: ENSG00000226899
Gene Name: RP11-298J20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-143
0.035
0
BOLA3-AS1
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000533563
Biotype: antisense
Gene id: ENSG00000225439
Gene Name: BOLA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1408-1430
0.035
1
RP11-305L7.1
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423380
Biotype: lincRNA
Gene id: ENSG00000230537
Gene Name: RP11-305L7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-597
0.035
2
RP11-211N8.2
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420615
Biotype: lincRNA
Gene id: ENSG00000226007
Gene Name: RP11-211N8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-167
0.023
0
6mer
16-31
0.012
1
RP11-121C6.5
hsa-miR-4677-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610448
Biotype: lincRNA
Gene id: ENSG00000276272
Gene Name: RP11-121C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-986
0.031
1
6mer
291-308
0.004
1
RP5-1050E16.1
hsa-miR-4677-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442086
Biotype: lincRNA
Gene id: ENSG00000236507
Gene Name: RP5-1050E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
159-177
0.035
0
XLOC_012436
hsa-miR-4677-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025605
Biotype: transcript isomorph
Gene id: XLOC_012436
Gene Name: XLOC_012436
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-28
0.035
1
RP11-646E18.4
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000565024
Biotype: lincRNA
Gene id: ENSG00000260377
Gene Name: RP11-646E18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-80
0.035
1
XLOC_007089
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11225-11234
0.013
0
7mer
2929-2947
0.004
Not Conserved
7mer
8739-8765
0.004
0
7mer
8477-8489
0.003
Not Conserved
6mer
9785-9801
0.003
0
6mer
1868-1872
0.003
0
6mer
7467-7482
0.003
0
7mer
3947-3969
0.001
Not Conserved
6mer
6409-6435
0.001
Not Conserved
XLOC_008486
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018206
Biotype: transcript isomorph
Gene id: XLOC_008486
Gene Name: XLOC_008486
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-243
0.021
0
7mer
1993-2006
0.006
0
6mer
2126-2130
0.003
1
6mer
2076-2094
0.003
1
6mer
74-101
0.002
0
SMAD1-AS1
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513542
Biotype: antisense
Gene id: ENSG00000250902
Gene Name: SMAD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-334
0.025
8
6mer
38-52
0.009
7
LINC00864
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429129
Biotype: lincRNA
Gene id: ENSG00000228055
Gene Name: LINC00864
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-408
0.019
Not Conserved
7mer
651-675
0.016
Not Conserved
XLOC_007279
hsa-miR-4677-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015917
Biotype: transcript isomorph
Gene id: XLOC_007279
Gene Name: XLOC_007279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4939-4962
0.013
3
7mer
841-862
0.007
0
6mer
4795-4818
0.004
1
7mer
1895-1908
0.002
1
6mer
2763-2790
0.002
1
6mer
1476-1497
0.002
1
6mer
3835-3839
0.002
1
6mer
1765-1769
0.001
2
6mer
3272-3276
0.001
1
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