LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-111F5.8
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-380
0.027
0
6mer
291-295
0.005
0
6mer
2282-2299
0.003
0
LOC100507577
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1619
0.034
8
6mer
523-545
0.002
Not Conserved
CTA-212A2.3
hsa-miR-4677-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4715-4731
0.016
1
8mer
4986-5011
0.011
1
7mer
7964-7988
0.005
1
6mer
8167-8171
0.001
1
6mer
5077-5082
0.001
1
6mer
5215-5219
0.001
0
CTD-2010I22.2
hsa-miR-4677-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507876
Biotype: lincRNA
Gene id: ENSG00000248391
Gene Name: CTD-2010I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-119
0.036
0
LINC00638
hsa-miR-4677-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1369-1376
0.028
1
7mer
913-933
0.007
0
XLOC_013531
hsa-miR-4677-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-649
0.021
0
8mer
2976-3002
0.007
1
6mer
2115-2119
0.002
1
6mer
1352-1374
0.002
1
6mer
2938-2955
0.002
1
6mer
3052-3056
0.001
1
AC002463.3
hsa-miR-4677-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110158.1
Biotype: lincRNA
Gene id: NR_110158.1 (gene)
Gene Name: AC002463.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
930-935
0.031
7
6mer
775-793
0.005
0
XLOC_012891
hsa-miR-4677-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-37
0.026
1
6mer
49-69
0.010
1
HAND2-AS1
hsa-miR-4677-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507571
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
636-659
0.029
10
6mer
277-296
0.004
1
6mer
1445-1458
0.002
2
XLOC_004126
hsa-miR-4677-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008625
Biotype: transcript isomorph
Gene id: XLOC_004126
Gene Name: XLOC_004126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-248
0.019
Not Conserved
7mer
57-77
0.017
0
RP11-233E12.1
hsa-miR-4677-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415910
Biotype: lincRNA
Gene id: ENSG00000237460
Gene Name: RP11-233E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-235
0.035
0
RP11-166P13.4
hsa-miR-4677-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576014
Biotype: antisense
Gene id: ENSG00000263089
Gene Name: RP11-166P13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4213-4219
0.014
1
8mer
3431-3442
0.013
0
6mer
20-37
0.005
0
6mer
3684-3704
0.004
5
XLOC_013018
hsa-miR-4677-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026966
Biotype: transcript isomorph
Gene id: XLOC_013018
Gene Name: XLOC_013018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-138
0.035
1
RP11-115H13.1
hsa-miR-4677-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1922-1942
0.030
1
6mer
733-747
0.003
0
6mer
464-479
0.002
0
XLOC_008329
hsa-miR-4677-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017592
Biotype: transcript isomorph
Gene id: XLOC_008329
Gene Name: XLOC_008329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-160
0.035
0
XLOC_011434
hsa-miR-4677-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023635
Biotype: transcript isomorph
Gene id: XLOC_011434
Gene Name: XLOC_011434
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1463-1469
0.017
0
7mer
1113-1123
0.013
1
6mer
397-413
0.003
0
6mer
895-913
0.003
3
CTD-3065B20.3
hsa-miR-4677-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559839
Biotype: antisense
Gene id: ENSG00000259314
Gene Name: CTD-3065B20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
706-720
0.032
7
6mer
273-288
0.003
1
BLOC1S5-TXNDC5
hsa-miR-4677-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3166-3182
0.018
10
7mer
439-465
0.014
5
6mer
1439-1451
0.002
0
6mer
2302-2322
0.001
0
RP1-199J3.7
hsa-miR-4677-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607332
Biotype: antisense
Gene id: ENSG00000272017
Gene Name: RP1-199J3.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-195
0.018
3
7mer
42-53
0.012
7
7mer
331-352
0.004
1
6mer
320-338
0.002
0
XLOC_009475
hsa-miR-4677-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019671
Biotype: transcript isomorph
Gene id: XLOC_009475
Gene Name: XLOC_009475
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-713
0.025
1
6mer
1440-1449
0.005
2
7mer
741-756
0.005
1
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