LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012889
hsa-miR-4677-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026570
Biotype: transcript isomorph
Gene id: XLOC_012889
Gene Name: XLOC_012889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3199-3216
0.015
1
7mer
418-429
0.012
1
7mer
433-455
0.010
1
RP11-152N13.16
hsa-miR-4677-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608444
Biotype: antisense
Gene id: ENSG00000272599
Gene Name: RP11-152N13.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-475
0.036
0
RP11-463J10.2
hsa-miR-4677-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556834
Biotype: antisense
Gene id: ENSG00000258928
Gene Name: RP11-463J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-481
0.029
1
6mer
36-40
0.007
3
RGS5
hsa-miR-4677-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451759
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
711-735
0.025
2
7mer
239-256
0.011
1
TBL1XR1-AS1
hsa-miR-4677-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000617758
Biotype: antisense
Gene id: ENSG00000231310
Gene Name: TBL1XR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
730-737
0.036
1
RP11-20J15.3
hsa-miR-4677-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000452578
Biotype: lincRNA
Gene id: ENSG00000229116
Gene Name: RP11-20J15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-386
0.024
0
6mer
618-626
0.013
1
AC093901.1
hsa-miR-4677-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449075
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-96
0.036
12
XLOC_003471
hsa-miR-4677-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007487
Biotype: transcript isomorph
Gene id: XLOC_003471
Gene Name: XLOC_003471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1927-1933
0.029
0
7mer
973-994
0.004
0
6mer
1375-1394
0.004
1
FAM201A
hsa-miR-4677-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027294.1
Biotype: lincRNA
Gene id: NR_027294.1 (gene)
Gene Name: FAM201A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1584-1600
0.022
0
6mer
222-241
0.014
1
RP11-362K2.2
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548969
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-240
0.036
1
AP000679.2
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530303
Biotype: antisense
Gene id: ENSG00000176984
Gene Name: AP000679.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-553
0.036
1
AC002463.3
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453459
Biotype: lincRNA
Gene id: ENSG00000223646
Gene Name: AC002463.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
933-938
0.031
7
6mer
778-796
0.005
0
TARID
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607033
Biotype: antisense
Gene id: ENSG00000227954
Gene Name: TARID
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-362
0.023
2
7mer
2386-2408
0.009
3
6mer
2447-2461
0.003
2
LINC01460
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000379677
Biotype: lincRNA
Gene id: ENSG00000205334
Gene Name: LINC01460
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-262
0.014
2
7mer
2473-2488
0.013
3
6mer
694-710
0.005
6
7mer
2334-2355
0.004
1
AC008079.10
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
20055-20064
0.004
2
7mer
3828-3848
0.003
1
6mer
20073-20100
0.003
0
7mer
2379-2404
0.003
1
6mer
3360-3367
0.002
3
7mer
3596-3621
0.002
1
6mer
14324-14338
0.002
1
6mer
19380-19406
0.002
3
6mer
5688-5698
0.002
2
6mer
2729-2734
0.002
1
6mer
9823-9832
0.002
1
7mer
10263-10280
0.001
1
6mer
16081-16101
0.001
6
6mer
8791-8818
0.001
1
6mer
9096-9116
0.001
1
6mer
10330-10342
0.001
0
6mer
7167-7190
0.001
1
6mer
13728-13747
0.001
1
6mer
14282-14296
0.001
3
RP11-864G5.3
hsa-miR-4677-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526310
Biotype: antisense
Gene id: ENSG00000254422
Gene Name: RP11-864G5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-131
0.036
11
XLOC_005284
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011811
Biotype: transcript isomorph
Gene id: XLOC_005284
Gene Name: XLOC_005284
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-608
0.014
1
7mer
569-587
0.013
1
7mer
330-346
0.009
0
RP11-333E1.1
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571689
Biotype: antisense
Gene id: ENSG00000261879
Gene Name: RP11-333E1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-300
0.025
1
6mer
557-583
0.006
5
6mer
1164-1185
0.003
4
6mer
102-125
0.003
0
RP4-756G23.5
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441316
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1098-1105
0.036
8
RP11-622C24.2
hsa-miR-4677-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617013
Biotype: lincRNA
Gene id: ENSG00000277152
Gene Name: RP11-622C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-161
0.015
1
8mer
6039-6061
0.007
2
6mer
6148-6172
0.004
4
7mer
4473-4494
0.003
1
7mer
1903-1925
0.002
1
6mer
2906-2910
0.002
1
6mer
5573-5595
0.001
0
6mer
4735-4751
0.001
2
6mer
4528-4533
0.000
0
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