LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-513O17.2
hsa-miR-4677-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519160
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-59
0.037
0
HAND2-AS1
hsa-miR-4677-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508534
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
584-607
0.030
10
6mer
277-296
0.004
1
6mer
1393-1406
0.002
2
LINC00426
hsa-miR-4677-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416261
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-50
0.031
2
6mer
77-87
0.006
0
XLOC_000037
hsa-miR-4677-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000830
Biotype: transcript isomorph
Gene id: XLOC_000037
Gene Name: XLOC_000037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-178
0.026
1
7mer
584-594
0.007
1
6mer
605-624
0.003
1
CASC6
hsa-miR-4677-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437768
Biotype: lincRNA
Gene id: ENSG00000224944
Gene Name: CASC6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-468
0.037
8
LINC00656
hsa-miR-4677-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443744
Biotype: lincRNA
Gene id: ENSG00000233746
Gene Name: LINC00656
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
726-739
0.025
0
7mer
71-90
0.009
0
6mer
1479-1502
0.003
1
RP11-168P8.3
hsa-miR-4677-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446107
Biotype: lincRNA
Gene id: ENSG00000227029
Gene Name: RP11-168P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-51
0.037
1
LINC00094
hsa-miR-4677-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
489-505
0.022
7
7mer
4792-4797
0.006
1
6mer
1093-1108
0.002
1
6mer
3378-3397
0.001
1
6mer
2806-2822
0.001
1
6mer
3844-3864
0.001
Not Conserved
6mer
3654-3669
0.001
1
6mer
3061-3083
0.001
0
6mer
2311-2331
0.001
0
XLOC_001469
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003675
Biotype: transcript isomorph
Gene id: XLOC_001469
Gene Name: XLOC_001469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-200
0.031
2
6mer
525-530
0.006
Not Conserved
RP11-231I13.2
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567252
Biotype: antisense
Gene id: ENSG00000242120
Gene Name: RP11-231I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
428-450
0.023
9
7mer
304-315
0.007
2
6mer
603-617
0.007
7
RP11-681L8.1
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000518105
Biotype: sense_overlapping
Gene id: ENSG00000254044
Gene Name: RP11-681L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-346
0.021
0
7mer
176-191
0.011
1
6mer
258-268
0.005
1
XLOC_004622
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010156
Biotype: transcript isomorph
Gene id: XLOC_004622
Gene Name: XLOC_004622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-115
0.037
3
LOC101926935
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-145
0.008
Not Conserved
6mer
2392-2418
0.005
0
6mer
2810-2814
0.005
0
6mer
3642-3658
0.005
0
6mer
4582-4595
0.004
0
7mer
1721-1732
0.004
Not Conserved
7mer
504-530
0.003
Not Conserved
6mer
2374-2387
0.002
0
RP4-760C5.3
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000448580
Biotype: lincRNA
Gene id: ENSG00000231081
Gene Name: RP4-760C5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-280
0.036
1
XLOC_008535
hsa-miR-4677-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018255
Biotype: transcript isomorph
Gene id: XLOC_008535
Gene Name: XLOC_008535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1295-1301
0.016
0
7mer
110-132
0.007
0
6mer
2592-2596
0.005
1
6mer
348-362
0.004
2
6mer
1792-1816
0.003
2
6mer
887-905
0.002
1
6mer
1842-1864
0.001
0
NEAT1
hsa-miR-4677-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7386-7398
0.006
1
6mer
22337-22362
0.004
1
7mer
14991-15004
0.003
4
7mer
7945-7971
0.003
0
8mer
2520-2541
0.003
1
6mer
17492-17512
0.003
1
6mer
10596-10618
0.002
3
6mer
17005-17021
0.002
0
6mer
2852-2869
0.002
0
6mer
14898-14912
0.002
1
6mer
3857-3879
0.002
1
6mer
11446-11468
0.002
0
6mer
2462-2488
0.001
1
6mer
7116-7130
0.001
2
6mer
11680-11706
0.001
1
TYMSOS
hsa-miR-4677-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000323813
Biotype: antisense
Gene id: ENSG00000176912
Gene Name: TYMSOS
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-230
0.032
0
6mer
76-83
0.005
0
HCG18
hsa-miR-4677-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602591
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
626-633
0.017
0
7mer
1553-1573
0.014
1
6mer
1101-1123
0.003
0
6mer
464-491
0.003
0
XLOC_011393
hsa-miR-4677-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023571
Biotype: transcript isomorph
Gene id: XLOC_011393
Gene Name: XLOC_011393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
56-63
0.036
1
LINC00652
hsa-miR-4677-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412553
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
434-454
0.020
Not Conserved
7mer
461-467
0.007
Not Conserved
6mer
2304-2315
0.002
0
6mer
1227-1236
0.002
1
6mer
885-909
0.002
1
6mer
1038-1062
0.001
0
6mer
2267-2290
0.001
1
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