LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-747H7.3
hsa-miR-4677-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5499-5519
0.010
0
7mer
6458-6474
0.008
1
7mer
6500-6519
0.008
1
7mer
3144-3155
0.006
1
6mer
6847-6866
0.003
1
6mer
4530-4543
0.002
1
MTOR-AS1
hsa-miR-4677-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420480
Biotype: antisense
Gene id: ENSG00000225602
Gene Name: MTOR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-46
0.038
2
RP11-290O12.2
hsa-miR-4677-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000623269
Biotype: antisense
Gene id: ENSG00000280241
Gene Name: RP11-290O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
514-526
0.038
5
RP11-545H22.1
hsa-miR-4677-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512628
Biotype: lincRNA
Gene id: ENSG00000251264
Gene Name: RP11-545H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-372
0.031
3
6mer
582-587
0.006
1
XLOC_009628
hsa-miR-4677-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020283
Biotype: transcript isomorph
Gene id: XLOC_009628
Gene Name: XLOC_009628
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7248-7268
0.017
1
6mer
7379-7383
0.005
0
6mer
467-488
0.005
3
7mer
5047-5060
0.003
0
7mer
4330-4335
0.003
1
6mer
3862-3879
0.002
0
6mer
4112-4116
0.002
0
6mer
5351-5370
0.001
1
RP11-360K13.1
hsa-miR-4677-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-434
0.023
2
8mer
132-151
0.010
Not Conserved
6mer
1529-1549
0.005
1
RP11-424M24.5
hsa-miR-4677-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574178
Biotype: lincRNA
Gene id: ENSG00000262890
Gene Name: RP11-424M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
589-595
0.037
3
RP11-506B6.6
hsa-miR-4677-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433684
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
932-945
0.031
2
6mer
981-995
0.007
5
XLOC_013743
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1642-1659
0.021
1
7mer
1068-1074
0.006
1
6mer
687-691
0.006
7
6mer
1342-1357
0.002
1
6mer
1040-1061
0.001
4
RP1-178F10.3
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1871-1896
0.024
0
7mer
2020-2034
0.011
0
6mer
1394-1398
0.002
1
CTC-321K16.1
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509372
Biotype: antisense
Gene id: ENSG00000250167
Gene Name: CTC-321K16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-368
0.026
1
7mer
73-82
0.008
1
6mer
96-122
0.003
0
XLOC_004606
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010141
Biotype: transcript isomorph
Gene id: XLOC_004606
Gene Name: XLOC_004606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-306
0.034
4
6mer
390-398
0.003
0
LINC00683
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579781
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2873-2881
0.017
1
7mer
59-77
0.011
2
6mer
1231-1235
0.003
3
6mer
2542-2559
0.003
0
6mer
1496-1506
0.002
1
6mer
2009-2026
0.001
1
XLOC_006126
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
737-762
0.015
0
8mer
370-387
0.011
Not Conserved
6mer
41-63
0.011
0
FLJ31356
hsa-miR-4677-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445878
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-173
0.013
0
8mer
2293-2314
0.009
1
8mer
2279-2288
0.006
2
6mer
2535-2562
0.004
2
6mer
189-204
0.002
0
6mer
1445-1460
0.002
0
6mer
1359-1363
0.001
4
LINC00608
hsa-miR-4677-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024385.1
Biotype: lincRNA
Gene id: NR_024385.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1163-1178
0.031
1
6mer
1308-1313
0.004
0
6mer
108-126
0.003
Not Conserved
TRHDE-AS1
hsa-miR-4677-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549957
Biotype: retained_intron
Gene id: ENSG00000236333
Gene Name: TRHDE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4023-4029
0.035
2
6mer
1929-1938
0.001
1
XLOC_013995
hsa-miR-4677-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-452
0.030
0
6mer
3953-3974
0.007
1
XLOC_005087
hsa-miR-4677-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010560
Biotype: transcript isomorph
Gene id: XLOC_005087
Gene Name: XLOC_005087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3462-3479
0.012
1
7mer
37-47
0.008
0
6mer
3294-3310
0.004
0
6mer
2970-2974
0.003
1
6mer
2755-2768
0.003
4
6mer
2154-2169
0.002
6
7mer
2682-2700
0.002
Not Conserved
6mer
1590-1611
0.002
0
6mer
1398-1421
0.001
0
RP11-679B19.1
hsa-miR-4677-3p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000622621
Biotype: antisense
Gene id: ENSG00000277954
Gene Name: RP11-679B19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
767-791
0.015
2
8mer
3871-3877
0.007
Not Conserved
7mer
3023-3040
0.006
2
6mer
555-576
0.004
4
6mer
540-554
0.002
4
6mer
2590-2602
0.001
3
7mer
2496-2510
0.001
0
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