LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_013862
hsa-miR-4677-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028792
Biotype: transcript isomorph
Gene id: XLOC_013862
Gene Name: XLOC_013862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-449
0.038
2
LINC01142
hsa-miR-4677-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440404
Biotype: lincRNA
Gene id: ENSG00000224286
Gene Name: LINC01142
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
973-981
0.020
1
7mer
464-470
0.010
Not Conserved
6mer
347-359
0.009
8
RP11-702F3.3
hsa-miR-4677-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533793
Biotype: lincRNA
Gene id: ENSG00000255314
Gene Name: RP11-702F3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
883-903
0.031
2
6mer
179-183
0.007
4
RP1-257A15.1
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418665
Biotype: antisense
Gene id: ENSG00000225437
Gene Name: RP1-257A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-418
0.038
1
RP11-352B15.2
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-305
0.038
0
XLOC_002760
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006154
Biotype: transcript isomorph
Gene id: XLOC_002760
Gene Name: XLOC_002760
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1309
0.027
1
6mer
1027-1050
0.004
0
6mer
1473-1492
0.004
1
6mer
1237-1254
0.003
1
RP11-669N7.3
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542578
Biotype: lincRNA
Gene id: ENSG00000256699
Gene Name: RP11-669N7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1336-1356
0.023
0
6mer
1532-1553
0.006
1
6mer
1502-1522
0.005
2
6mer
509-535
0.003
2
RP11-580I1.2
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566676
Biotype: lincRNA
Gene id: ENSG00000261621
Gene Name: RP11-580I1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-360
0.016
1
7mer
546-571
0.014
1
6mer
427-444
0.008
1
RP11-521I2.3
hsa-miR-4677-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000564694
Biotype: sense_overlapping
Gene id: ENSG00000260368
Gene Name: RP11-521I2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-380
0.025
1
6mer
34-43
0.006
0
6mer
1001-1014
0.004
1
6mer
512-533
0.003
1
XLOC_012449
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025615
Biotype: transcript isomorph
Gene id: XLOC_012449
Gene Name: XLOC_012449
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-90
0.038
1
TPTEP1
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1351-1368
0.016
1
6mer
370-391
0.015
1
6mer
612-630
0.007
0
TTN-AS1
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418062
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-419
0.031
1
6mer
255-260
0.007
2
LINC00963
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9181-9207
0.007
0
7mer
5312-5326
0.005
1
7mer
5987-6002
0.004
1
7mer
6614-6619
0.004
1
6mer
9296-9311
0.003
0
8mer
8192-8216
0.003
0
6mer
322-348
0.003
1
7mer
1650-1663
0.002
0
6mer
3067-3092
0.002
1
6mer
9178-9198
0.001
0
6mer
8307-8330
0.001
0
6mer
1876-1903
0.001
0
SH3BP5-AS1
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420195
Biotype: antisense
Gene id: ENSG00000224660
Gene Name: SH3BP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
638-658
0.016
2
7mer
5388-5398
0.009
0
7mer
4897-4917
0.006
0
7mer
5062-5074
0.005
1
6mer
1671-1690
0.002
4
6mer
2548-2553
0.001
0
XLOC_003234
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-218
0.030
1
8mer
825-833
0.004
0
6mer
1140-1153
0.003
1
6mer
802-815
0.002
1
RP4-635E18.8
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612387
Biotype: antisense
Gene id: ENSG00000271895
Gene Name: RP4-635E18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-309
0.038
6
RP11-392P7.6
hsa-miR-4677-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499948
Biotype: antisense
Gene id: ENSG00000247498
Gene Name: RP11-392P7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1692-1717
0.038
1
PCBP1-AS1
hsa-miR-4677-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435880
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-386
0.019
0
7mer
1729-1742
0.009
0
6mer
2121-2135
0.004
1
6mer
1273-1277
0.002
1
6mer
1168-1184
0.002
3
6mer
297-308
0.001
0
RP11-46H11.3
hsa-miR-4677-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-189
0.038
0
RP11-206L10.3
hsa-miR-4677-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1005-1024
0.020
Not Conserved
6mer
3008-3027
0.006
0
6mer
1802-1827
0.005
0
7mer
3842-3864
0.005
Not Conserved
6mer
671-697
0.002
Not Conserved
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