LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-548N17.1
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617699
Biotype: antisense
Gene id: ENSG00000275762
Gene Name: RP11-548N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-121
0.035
0
6mer
304-323
0.004
1
CTD-3023L14.1
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524073
Biotype: lincRNA
Gene id: ENSG00000253774
Gene Name: CTD-3023L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-302
0.031
3
6mer
478-482
0.008
2
XLOC_007998
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017185
Biotype: transcript isomorph
Gene id: XLOC_007998
Gene Name: XLOC_007998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-276
0.039
0
CCAT1
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500112
Biotype: lincRNA
Gene id: ENSG00000247844
Gene Name: CCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2079-2085
0.025
3
6mer
1631-1651
0.003
1
6mer
668-672
0.003
0
6mer
818-832
0.003
3
6mer
1416-1442
0.002
1
6mer
1191-1195
0.002
1
6mer
602-627
0.001
1
RP11-680G24.6
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000617759
Biotype: antisense
Gene id: ENSG00000275910
Gene Name: RP11-680G24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-360
0.039
6
RP11-132N15.3
hsa-miR-4677-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000446091
Biotype: lincRNA
Gene id: ENSG00000224187
Gene Name: RP11-132N15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1091-1096
0.023
5
6mer
1481-1498
0.005
3
6mer
1243-1257
0.004
3
6mer
1391-1409
0.004
1
6mer
801-827
0.003
3
AC007679.3
hsa-miR-4677-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422116
Biotype: antisense
Gene id: ENSG00000225610
Gene Name: AC007679.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-601
0.028
4
7mer
537-555
0.011
1
HCG18
hsa-miR-4677-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602516
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1731-1744
0.033
1
6mer
2343-2358
0.004
1
6mer
2262-2288
0.002
1
RP11-362K2.2
hsa-miR-4677-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552519
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-73
0.039
1
AC006538.1
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000567905
Biotype: sense_intronic
Gene id: ENSG00000261342
Gene Name: AC006538.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
963-969
0.018
0
7mer
1243-1255
0.013
0
6mer
1339-1363
0.003
0
6mer
1409-1426
0.003
0
6mer
361-368
0.002
0
RP11-542F9.1
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449928
Biotype: lincRNA
Gene id: ENSG00000223504
Gene Name: RP11-542F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-220
0.022
5
8mer
271-290
0.016
1
RP11-513O17.2
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520929
Biotype: lincRNA
Gene id: ENSG00000253301
Gene Name: RP11-513O17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-262
0.039
0
XLOC_007771
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016401
Biotype: transcript isomorph
Gene id: XLOC_007771
Gene Name: XLOC_007771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
151-155
0.009
2
6mer
88-92
0.007
1
6mer
34-38
0.006
1
6mer
70-74
0.006
1
6mer
94-98
0.005
0
6mer
129-133
0.005
0
CTC-218H9.1
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505261
Biotype: sense_intronic
Gene id: ENSG00000249605
Gene Name: CTC-218H9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-286
0.039
4
RP11-325B23.2
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000508616
Biotype: lincRNA
Gene id: ENSG00000251088
Gene Name: RP11-325B23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-99
0.039
4
RP13-884E18.4
hsa-miR-4677-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510922
Biotype: lincRNA
Gene id: ENSG00000250777
Gene Name: RP13-884E18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-448
0.034
0
8mer+mismatch
485-505
0.004
0
MIR4534
hsa-miR-4677-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19764-19781
0.007
9
8mer
49524-49542
0.003
0
7mer
35914-35937
0.003
0
6mer
24496-24509
0.002
3
6mer
10154-10170
0.002
1
7mer
40400-40422
0.002
0
7mer
41059-41079
0.002
0
6mer
4966-4970
0.002
0
6mer
50608-50632
0.002
3
6mer
7678-7691
0.001
1
6mer
13093-13103
0.001
2
7mer
48020-48040
0.001
1
6mer
32862-32884
0.001
1
6mer
2140-2159
0.001
0
6mer
38267-38281
0.001
1
6mer
31886-31911
0.001
1
6mer
13334-13360
0.001
Not Conserved
6mer
44415-44434
0.001
0
6mer
5785-5804
0.001
0
6mer
52435-52446
0.001
0
6mer
48775-48799
0.001
0
6mer
53105-53118
0.001
0
6mer
6212-6227
0.001
0
6mer
50993-51014
0.001
0
6mer
31964-31984
0.000
0
AC093901.1
hsa-miR-4677-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449819
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-14
0.038
12
AC015849.16
hsa-miR-4677-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604907
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-110
0.017
1
6mer
5244-5260
0.006
0
7mer
914-939
0.004
0
6mer
193-208
0.004
0
6mer
3681-3685
0.003
4
6mer
4238-4248
0.002
1
6mer
3384-3389
0.002
1
XLOC_000440
hsa-miR-4677-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001179
Biotype: transcript isomorph
Gene id: XLOC_000440
Gene Name: XLOC_000440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-295
0.038
0
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