LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-831H9.3
hsa-miR-4677-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532626
Biotype: antisense
Gene id: ENSG00000254964
Gene Name: RP11-831H9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-90
0.040
0
LINC00536
hsa-miR-4677-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505156
Biotype: lincRNA
Gene id: ENSG00000249917
Gene Name: LINC00536
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
589-601
0.019
9
6mer
644-654
0.007
8
6mer
157-174
0.004
1
6mer
377-393
0.003
1
6mer
1022-1027
0.003
2
6mer
1670-1688
0.003
4
6mer
960-977
0.001
0
XLOC_005811
hsa-miR-4677-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011229
Biotype: transcript isomorph
Gene id: XLOC_005811
Gene Name: XLOC_005811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-65
0.017
1
9mer
139-165
0.017
0
6mer
846-862
0.003
0
6mer
713-717
0.003
0
RP11-206L10.9
hsa-miR-4677-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412115
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
156-178
0.040
1
NCAM1-AS1
hsa-miR-4677-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526229
Biotype: antisense
Gene id: ENSG00000227487
Gene Name: NCAM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
251-258
0.040
1
STARD13-AS
hsa-miR-4677-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610879
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-244
0.035
1
6mer
537-561
0.004
0
RP11-410E4.1
hsa-miR-4677-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564407
Biotype: lincRNA
Gene id: ENSG00000259915
Gene Name: RP11-410E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1432-1438
0.036
2
6mer
695-710
0.003
3
RP11-11N9.4
hsa-miR-4677-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500843
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-153
0.021
2
7mer
390-405
0.015
1
6mer
14-30
0.004
1
RP1-249H1.4
hsa-miR-4677-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038863.1
Biotype: lincRNA
Gene id: NR_038863.1 (gene)
Gene Name: RP1-249H1.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
144-170
0.017
0
7mer
65-70
0.016
1
6mer
851-867
0.003
0
6mer
718-722
0.003
0
AC083949.1
hsa-miR-4677-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422013
Biotype: antisense
Gene id: ENSG00000224875
Gene Name: AC083949.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-88
0.024
5
6mer
20-35
0.013
6
6mer
246-265
0.003
2
RP11-154D17.1
hsa-miR-4677-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000413050
Biotype: lincRNA
Gene id: ENSG00000233926
Gene Name: RP11-154D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-408
0.039
0
TBL1XR1-AS1
hsa-miR-4677-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454723
Biotype: antisense
Gene id: ENSG00000231310
Gene Name: TBL1XR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
325-332
0.039
1
ZNRD1-AS1
hsa-miR-4677-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9558-9569
0.021
1
6mer
7117-7130
0.004
1
6mer
8425-8443
0.003
0
6mer
2749-2761
0.002
0
6mer
6071-6096
0.002
1
6mer
7752-7778
0.002
1
6mer
1738-1753
0.002
0
6mer
2520-2535
0.002
0
6mer
1414-1439
0.001
0
VWC2L-IT1
hsa-miR-4677-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416430
Biotype: sense_intronic
Gene id: ENSG00000224257
Gene Name: VWC2L-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-275
0.039
8
XLOC_007865
hsa-miR-4677-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016487
Biotype: transcript isomorph
Gene id: XLOC_007865
Gene Name: XLOC_007865
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1115-1121
0.023
1
8mer
874-880
0.013
1
6mer
626-644
0.003
1
RP11-550I24.2
hsa-miR-4677-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460796
Biotype: retained_intron
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-509
0.039
1
LOC100131289
hsa-miR-4677-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038929.1
Biotype: lincRNA
Gene id: NR_038929.1 (gene)
Gene Name: LOC100131289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-595
0.039
2
LINC00484
hsa-miR-4677-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000609752
Biotype: lincRNA
Gene id: ENSG00000235641
Gene Name: LINC00484
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-207
0.031
0
7mer
324-330
0.008
0
NALCN-AS1
hsa-miR-4677-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457843
Biotype: antisense
Gene id: ENSG00000233009
Gene Name: NALCN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2725-2736
0.016
1
8mer
425-439
0.013
1
7mer
1754-1780
0.006
1
8mer+wobble
337-356
0.004
0
RP13-36G14.4
hsa-miR-4677-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603952
Biotype: sense_intronic
Gene id: ENSG00000270223
Gene Name: RP13-36G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-135
0.031
0
6mer
423-438
0.008
0
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