LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
DGCR5
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-661
0.040
0
LINC00534
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523406
Biotype: lincRNA
Gene id: ENSG00000253394
Gene Name: LINC00534
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-366
0.025
1
7mer
186-204
0.015
2
TRPM2-AS
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456880
Biotype: antisense
Gene id: ENSG00000230061
Gene Name: TRPM2-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2013-2031
0.009
1
6mer
1942-1955
0.007
1
6mer
537-562
0.006
1
6mer
1999-2014
0.006
1
6mer
1746-1771
0.004
1
6mer
272-282
0.004
0
6mer
418-429
0.003
0
6mer
1348-1368
0.002
0
RP11-110I1.6
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531886
Biotype: antisense
Gene id: ENSG00000255114
Gene Name: RP11-110I1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-468
0.026
9
6mer
562-582
0.008
5
6mer
642-647
0.003
Not Conserved
6mer
329-346
0.003
1
XLOC_013064
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2692-2713
0.017
1
7mer
1430-1452
0.012
1
6mer
766-792
0.010
1
6mer
1452-1474
0.001
0
CTD-3220F14.1
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586442
Biotype: lincRNA
Gene id: ENSG00000267605
Gene Name: CTD-3220F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-526
0.029
2
8mer
224-245
0.012
Not Conserved
RP11-362K2.2
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546977
Biotype: lincRNA
Gene id: ENSG00000258231
Gene Name: RP11-362K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-293
0.035
1
6mer
1284-1301
0.005
1
RP11-440I14.2
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515178
Biotype: lincRNA
Gene id: ENSG00000250596
Gene Name: RP11-440I14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
585-595
0.029
0
7mer
1277-1289
0.006
1
6mer
1966-1981
0.005
3
LINC01105
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444416
Biotype: lincRNA
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-209
0.027
6
6mer
125-150
0.006
1
6mer
296-308
0.005
4
6mer
1375-1387
0.003
2
FLJ31356
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427929
Biotype: antisense
Gene id: ENSG00000229951
Gene Name: FLJ31356
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-173
0.013
0
8mer
2293-2314
0.010
1
8mer
2279-2288
0.008
2
6mer
2535-2562
0.005
2
6mer
189-204
0.002
0
6mer
1445-1460
0.002
0
6mer
1359-1363
0.001
4
CTD-2303H24.2
hsa-miR-4677-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000608141
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-57
0.026
0
7mer
726-747
0.012
0
6mer
291-301
0.003
Not Conserved
RP5-1024G6.8
hsa-miR-4677-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602943
Biotype: lincRNA
Gene id: ENSG00000270172
Gene Name: RP5-1024G6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
981-1001
0.012
4
7mer
2013-2035
0.010
0
7mer
2006-2011
0.008
1
6mer
1750-1762
0.004
0
6mer
1533-1555
0.003
2
6mer
1334-1338
0.003
1
RP11-375N15.2
hsa-miR-4677-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607598
Biotype: antisense
Gene id: ENSG00000272267
Gene Name: RP11-375N15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-357
0.040
4
RP11-11N9.4
hsa-miR-4677-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520819
Biotype: lincRNA
Gene id: ENSG00000247134
Gene Name: RP11-11N9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-153
0.022
2
7mer
418-433
0.015
1
6mer
14-30
0.004
1
RP11-3D4.2
hsa-miR-4677-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560268
Biotype: antisense
Gene id: ENSG00000259287
Gene Name: RP11-3D4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-432
0.021
0
8mer
240-261
0.016
1
6mer
203-207
0.003
0
XLOC_011353
hsa-miR-4677-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023240
Biotype: transcript isomorph
Gene id: XLOC_011353
Gene Name: XLOC_011353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-56
0.040
Not Conserved
RP11-661P17.1
hsa-miR-4677-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_110106.1
Biotype: lincRNA
Gene id: NR_110106.1 (gene)
Gene Name: RP11-661P17.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-56
0.040
Not Conserved
RP11-234K19.1
hsa-miR-4677-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513155
Biotype: lincRNA
Gene id: ENSG00000251399
Gene Name: RP11-234K19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32-45
0.040
1
RP11-661P17.1
hsa-miR-4677-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554333
Biotype: lincRNA
Gene id: ENSG00000258551
Gene Name: RP11-661P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-58
0.040
Not Conserved
RP3-467K16.4
hsa-miR-4677-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427824
Biotype: lincRNA
Gene id: ENSG00000228140
Gene Name: RP3-467K16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4818-4835
0.033
1
6mer
227-234
0.004
1
6mer
3886-3908
0.003
5
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