LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP11-421M1.8
hsa-miR-4677-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606522
Biotype: lincRNA
Gene id: ENSG00000272097
Gene Name: RP11-421M1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-661
0.041
2
LINC01268
hsa-miR-4677-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434296
Biotype: lincRNA
Gene id: ENSG00000227502
Gene Name: LINC01268
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-70
0.018
1
9mer
144-170
0.017
0
6mer
851-867
0.003
0
6mer
718-722
0.003
0
XLOC_012560
hsa-miR-4677-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025743
Biotype: transcript isomorph
Gene id: XLOC_012560
Gene Name: XLOC_012560
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-253
0.034
0
6mer
274-278
0.007
1
RP5-963E22.5
hsa-miR-4677-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-478
0.021
1
7mer
1341-1361
0.010
Not Conserved
8mer
1456-1466
0.008
Not Conserved
6mer
714-725
0.002
0
CTD-3162L10.1
hsa-miR-4677-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-711
0.025
1
6mer
311-327
0.007
1
8mer
973-994
0.006
Not Conserved
6mer
1116-1143
0.003
0
RP11-733D4.1
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456722
Biotype: lincRNA
Gene id: ENSG00000234580
Gene Name: RP11-733D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
657-679
0.030
6
7mer
665-678
0.008
0
6mer
411-418
0.003
0
XLOC_013670
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028327
Biotype: transcript isomorph
Gene id: XLOC_013670
Gene Name: XLOC_013670
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
562-582
0.030
1
8mer
382-398
0.011
0
LOC401324
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-333
0.023
0
7mer
2150-2170
0.018
11
RP11-73M7.6
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610043
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-263
0.018
2
8mer
496-502
0.016
0
6mer
124-135
0.004
3
6mer
830-849
0.003
Not Conserved
AC034110.1
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611889
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1823-1841
0.037
1
6mer
1428-1432
0.002
1
6mer
1092-1115
0.001
0
6mer
1106-1128
0.001
3
CTD-3162L10.1
hsa-miR-4677-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
692-711
0.025
1
6mer
311-327
0.007
1
8mer
973-994
0.006
Not Conserved
6mer
1116-1143
0.003
0
RP11-292D4.1
hsa-miR-4677-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513711
Biotype: lincRNA
Gene id: ENSG00000248346
Gene Name: RP11-292D4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
142-159
0.037
1
6mer
260-283
0.004
1
XLOC_003242
hsa-miR-4677-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006651
Biotype: transcript isomorph
Gene id: XLOC_003242
Gene Name: XLOC_003242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-634
0.035
1
6mer
302-313
0.005
0
RP11-1143G9.5
hsa-miR-4677-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1880-1901
0.022
1
7mer
4597-4622
0.013
1
7mer
3334-3357
0.004
1
6mer
1538-1542
0.002
0
RGS5
hsa-miR-4677-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429865
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-327
0.022
2
7mer
5-26
0.019
4
MIR4435-1HG
hsa-miR-4677-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015395.1
Biotype: lincRNA
Gene id: NR_015395.1 (gene)
Gene Name: MIR4435-1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-238
0.014
1
7mer
455-461
0.010
1
6mer
615-637
0.009
5
6mer
255-269
0.004
1
6mer
200-227
0.003
0
LINC01189
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046203.1
Biotype: lincRNA
Gene id: NR_046203.1 (gene)
Gene Name: LINC01189
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-169
0.029
0
6mer
229-233
0.011
1
RP3-508I15.9
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000431924
Biotype: antisense
Gene id: ENSG00000228274
Gene Name: RP3-508I15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-553
0.041
5
RP11-309M7.1
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000569111
Biotype: lincRNA
Gene id: ENSG00000261298
Gene Name: RP11-309M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
536-546
0.036
1
6mer
823-839
0.004
1
AC093627.9
hsa-miR-4677-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000480919
Biotype: lincRNA
Gene id: ENSG00000242474
Gene Name: AC093627.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
298-306
0.040
0
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