LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC01189
hsa-miR-4677-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2942-2967
0.026
0
6mer
3027-3031
0.009
1
6mer
1027-1044
0.007
1
LINC00608
hsa-miR-4677-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419101
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1817-1832
0.024
1
6mer
554-580
0.005
4
6mer
2211-2224
0.004
0
6mer
1962-1967
0.004
0
6mer
49-60
0.004
0
6mer
762-780
0.001
Not Conserved
RP11-442O1.3
hsa-miR-4677-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621095
Biotype: lincRNA
Gene id: ENSG00000275088
Gene Name: RP11-442O1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-741
0.010
0
7mer
794-817
0.008
0
9mer
1211-1230
0.008
0
7mer
3012-3028
0.005
0
6mer
301-305
0.003
1
6mer
2816-2834
0.003
1
7mer
2243-2264
0.002
1
6mer
195-210
0.002
0
RP11-15K3.1
hsa-miR-4677-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418379
Biotype: lincRNA
Gene id: ENSG00000236373
Gene Name: RP11-15K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-138
0.038
3
6mer
375-380
0.004
0
RP11-513G11.2
hsa-miR-4677-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440556
Biotype: lincRNA
Gene id: ENSG00000228271
Gene Name: RP11-513G11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1144-1168
0.024
4
8mer
931-937
0.015
3
6mer
431-448
0.002
1
RP11-20I20.2
hsa-miR-4677-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504969
Biotype: antisense
Gene id: ENSG00000251652
Gene Name: RP11-20I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
321-345
0.042
1
PAX8-AS1
hsa-miR-4677-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623306
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-318
0.042
Not Conserved
DOCK4-AS1
hsa-miR-4677-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452714
Biotype: antisense
Gene id: ENSG00000225572
Gene Name: DOCK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1688-1710
0.034
4
7mer
1565-1586
0.005
1
6mer
1156-1178
0.003
4
CASC14
hsa-miR-4677-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566912
Biotype: lincRNA
Gene id: ENSG00000260455
Gene Name: CASC14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1343-1363
0.018
2
6mer
1033-1037
0.006
7
6mer
1692-1704
0.005
3
6mer
50-72
0.004
3
7mer
968-979
0.003
1
6mer
402-406
0.003
0
6mer
678-692
0.003
0
GS1-304P7.3
hsa-miR-4677-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609032
Biotype: lincRNA
Gene id: ENSG00000273198
Gene Name: GS1-304P7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-121
0.042
1
CTD-3105H18.13
hsa-miR-4677-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000563695
Biotype: lincRNA
Gene id: ENSG00000261280
Gene Name: CTD-3105H18.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-636
0.032
1
6mer
1328-1347
0.009
1
LINC01204
hsa-miR-4677-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435394
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1516-1531
0.028
1
6mer
186-204
0.007
2
7mer
326-346
0.007
0
RP11-152N13.16
hsa-miR-4677-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000621900
Biotype: antisense
Gene id: ENSG00000272599
Gene Name: RP11-152N13.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-147
0.041
0
LL22NC03-63E9.3
hsa-miR-4677-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000407120
Biotype: antisense
Gene id: ENSG00000220891
Gene Name: LL22NC03-63E9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-134
0.024
1
7mer
92-97
0.013
1
6mer
2631-2651
0.004
0
6mer
1819-1835
0.001
Not Conserved
RP11-3P22.1
hsa-miR-4677-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413094
Biotype: lincRNA
Gene id: ENSG00000236839
Gene Name: RP11-3P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-158
0.041
1
HCG18
hsa-miR-4677-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602319
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1272-1287
0.036
1
6mer
3213-3226
0.005
2
RP4-800F24.1
hsa-miR-4677-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432081
Biotype: antisense
Gene id: ENSG00000235575
Gene Name: RP4-800F24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
225-238
0.037
0
6mer
207-225
0.005
0
XLOC_001277
hsa-miR-4677-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001893
Biotype: transcript isomorph
Gene id: XLOC_001277
Gene Name: XLOC_001277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-79
0.041
0
CTB-167B5.2
hsa-miR-4677-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585152
Biotype: lincRNA
Gene id: ENSG00000264868
Gene Name: CTB-167B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-641
0.018
4
7mer
2523-2545
0.015
1
7mer
1686-1702
0.006
0
6mer
1073-1092
0.002
1
RP11-408H1.3
hsa-miR-4677-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000418839
Biotype: lincRNA
Gene id: ENSG00000223387
Gene Name: RP11-408H1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2975-2994
0.030
1
6mer
401-424
0.003
0
6mer
2685-2709
0.003
1
6mer
2475-2494
0.002
0
6mer
1628-1654
0.001
0
6mer
1994-2019
0.001
1
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